SAMEA7600838

EXTERNAL

Sample

Accession

SAMEA7600838

Alias

GBVPK

Sex

Male

Center

CNRS UMR 5288

Description

Ancient Human individual from the 'Grotte Basse de la Vigne Perdue' cave

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway J2b1a

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R2'JT
JT
chrM:10674A>G, chrM:14875C>A, chrM:15549T>C, chrM:3639T>C
J
chrM:12035A>G, chrM:13131G>A, chrM:15492C>T, chrM:15942C>T, chrM:16287C>T, chrM:16482T>C, chrM:9821A>G
J2
chrM:14680G>A, chrM:16142C>T, chrM:6899C>T
J2b1a
chrM:15235G>A, chrM:15701C>T, chrM:5056C>T, chrM:9595G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 312462 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863307_1.fastq.gz	FASTQ	7.2 MB	—	—	4a65d72c2e6437a063d06094d2d6810f	Download
ERR4863307_2.fastq.gz	FASTQ	7.5 MB	—	—	6ed2b27bdd8de7dcced97b77cabd1f97	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 7396474 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863306_1.fastq.gz	FASTQ	244.1 MB	—	—	9443cc456d358d616b697e9ece49cba6	Download
ERR4863306_2.fastq.gz	FASTQ	290.2 MB	—	—	51d1d61bb7591d21b65692f28f2c8bb4	Download

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 1043916 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295842.fastq.gz	FASTQ	37.4 MB	—	—	834ff981fe2be121e471211069ca9a80	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 7515000 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863308_1.fastq.gz	FASTQ	247.0 MB	—	—	76f60cb2dbb25b8c798285d9a8042124	Download
ERR4863308_2.fastq.gz	FASTQ	291.6 MB	—	—	00ee21beabe50cb3ad8ddae5650f3dc1	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 8258328 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863310_1.fastq.gz	FASTQ	254.2 MB	—	—	8ce2fa71052be04eea81134b1336e131	Download
ERR4863310_2.fastq.gz	FASTQ	288.0 MB	—	—	82c2c1ffe9276790dda1215f6eee1976	Download

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 312146 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863309_1.fastq.gz	FASTQ	6.9 MB	—	—	85e98e6a73fde2c906cfb53a0bd31d3a	Download
ERR4863309_2.fastq.gz	FASTQ	7.5 MB	—	—	bc66ca87356f7e85f093d68f83f6fcf9	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 65566605 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295839.fastq.gz	FASTQ	2.4 GB	—	—	2bf31b465d33d18170f0bd0f89faf7fc	Download

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 1147143 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295840.fastq.gz	FASTQ	40.8 MB	—	—	bbeffe087831820602e81ae7947cfd94	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 54624696 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295841.fastq.gz	FASTQ	2.0 GB	—	—	d80b93dc68ae2194c6ed6d17b07aa8c6	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 45588766 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295843.fastq.gz	FASTQ	1.6 GB	—	—	54f7616a594c7bc0e8fa40627242ccfc	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.