SAMEA7600837

EXTERNAL

Sample

Accession

SAMEA7600837

Alias

TORTF

Sex

Female

Center

CNRS UMR 5288

Description

Ancient Human individual from the 'Grotte des Tortues' cave

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway H6a1a

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
HV
chrM:11142A>G, chrM:14189T>C
H
chrM:2130G>A, chrM:6451T>C
H6
chrM:15785T>C, chrM:15905A>G, chrM:16231T>C
H6a1
chrM:3338G>A, chrM:4150A>G, chrM:8803G>A
H6a1a
chrM:10676T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 260556 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863303_1.fastq.gz	FASTQ	5.8 MB	—	—	adc394fe74a0e3fa98d2b5f1fd6e35f5	Download
ERR4863303_2.fastq.gz	FASTQ	6.2 MB	—	—	e491e0ab6cdc755265c844da4bcff667	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 78986059 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295835.fastq.gz	FASTQ	3.0 GB	—	—	e083427f70e1029f92d731f994e389f1	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 9478196 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863301_1.fastq.gz	FASTQ	290.8 MB	—	—	285eb475804c80af505b5f372500042a	Download
ERR4863301_2.fastq.gz	FASTQ	352.3 MB	—	—	7783132703da9eb0e82aa2c56c5e278a	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 8139720 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863302_1.fastq.gz	FASTQ	241.2 MB	—	—	f1289e7f64b9ad79a1e7785096fd1945	Download
ERR4863302_2.fastq.gz	FASTQ	294.4 MB	—	—	c5f1447d85fcfb34b4b56b57ced7be66	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 5617438 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863304_1.fastq.gz	FASTQ	168.0 MB	—	—	092402d89bf94f4d5ab7ff55280c81b9	Download
ERR4863304_2.fastq.gz	FASTQ	198.8 MB	—	—	a49c787a105bfc52684d17ba8821746d	Download

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 237236 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863305_1.fastq.gz	FASTQ	5.4 MB	—	—	c1e0571e25fa4697c87e2a512e9e1f0f	Download
ERR4863305_2.fastq.gz	FASTQ	5.6 MB	—	—	c236c22ed216aa3779f626c6a0e40afd	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 90438995 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295834.fastq.gz	FASTQ	3.5 GB	—	—	7b36b33bfc905d005c74ca9562a8db41	Download

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 792406 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295836.fastq.gz	FASTQ	31.0 MB	—	—	a6d738f92373e9762593b858ce7f2107	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 38519825 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295837.fastq.gz	FASTQ	1.5 GB	—	—	eb35a0fbf43876397978d83bd8e1bc02	Download

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 892486 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295838.fastq.gz	FASTQ	33.9 MB	—	—	2509411b43ae8a76fd681df7ab864ebe	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.