SAMEA7600835

EXTERNAL

Sample

Accession

SAMEA7600835

Alias

TORTD

Sex

Male

Center

CNRS UMR 5288

Description

Ancient Human individual from the 'Grotte des Tortues' cave

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway K1a2a

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U2'3'4'7'8'9
chrM:1235A>G
U8
chrM:9121T>C
U8b
chrM:13590C>T, chrM:2903A>G, chrM:8478G>A
K
chrM:10722T>C, chrM:14221T>C, chrM:15647T>C, chrM:15734T>C, chrM:9973A>G
K1
chrM:613T>C, chrM:9821A>G
K1a
chrM:16490C>T
K1a2a
chrM:10448T>C, chrM:5196G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 1161178 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295824.fastq.gz	FASTQ	38.8 MB	—	—	da14e7b5f9a4e87022dfd81a41f665e4	Download

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 217756 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863291_1.fastq.gz	FASTQ	4.3 MB	—	—	bc794ceb673cd50b64f023d22a572e68	Download
ERR4863291_2.fastq.gz	FASTQ	4.3 MB	—	—	3761691d28659cd87d7da1dca433242f	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 3841128 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863292_1.fastq.gz	FASTQ	80.3 MB	—	—	ee30df08f0277151b4dcdc511e19d5de	Download
ERR4863292_2.fastq.gz	FASTQ	103.3 MB	—	—	0a3f3e5524d5b42e0dd4699797f01a71	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 22392271 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295825.fastq.gz	FASTQ	715.2 MB	—	—	fb8cd04c0530aa245d82325a0d44f13b	Download

Instrument: Illumina NovaSeq 6000 · Layout: SINGLE · Reads: 24477023 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295826.fastq.gz	FASTQ	753.4 MB	—	—	943b7de17b944c1757b2fd2e7dd376eb	Download

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 859663 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295827.fastq.gz	FASTQ	33.5 MB	—	—	f4b7bc10e76e82246dae470e5a50453a	Download

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 1627206 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863293_1.fastq.gz	FASTQ	37.8 MB	—	—	acfe56f6d6174af9af92f9812ba5618d	Download
ERR4863293_2.fastq.gz	FASTQ	49.1 MB	—	—	911776e10b2c04aca1968b91ab74de01	Download

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 433190 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863294_1.fastq.gz	FASTQ	9.9 MB	—	—	16ea415e1ba06f174963342214876e12	Download
ERR4863294_2.fastq.gz	FASTQ	10.4 MB	—	—	ec988d05406dca4eb0f2d049ec404abc	Download

Instrument: Illumina MiniSeq · Layout: PAIRED · Reads: 576876 · Read length: — · Date: 2021-01-13

File	Format	Size	Reference	Aligner	md5
ERR4863295_1.fastq.gz	FASTQ	12.6 MB	—	—	802f7ac2acd6d74b0c1df21462ca695d	Download
ERR4863295_2.fastq.gz	FASTQ	13.6 MB	—	—	09f50b460d3e2499757aae20a1f8bab1	Download

Instrument: Illumina MiniSeq · Layout: SINGLE · Reads: 1106797 · Read length: — · Date: 2021-02-13

File	Format	Size	Reference	Aligner	md5
ERR5295828.fastq.gz	FASTQ	43.4 MB	—	—	fafb0e38c06d1208f6a054c833ecab17	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.