SAMEA6604239

EXTERNAL

Sample

Accession: SAMEA6604239
Alias: NA19686
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway B2t

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
B4
chrM:15640T>C
B4b'd'e'j
chrM:14958C>T, chrM:251A>G
B4b
chrM:13013G>A, chrM:16492G>A, chrM:4243G>A
B2
chrM:10600C>T, chrM:2970A>G, chrM:4400T>C, chrM:5896C>T, chrM:9373T>C
B2t
chrM:10215A>G, chrM:14667A>G, chrM:15307G>A, chrM:15682C>T, chrM:15890C>T, chrM:4396T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 731009800 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
NA19686.final.cram	CRAM	14.9 GB	—	—	60046829012a67fd8da26726f2a61469	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.