SAMEA6604230

EXTERNAL

Sample

Accession: SAMEA6604230
Alias: NA19660
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:6760G>A

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
A
chrM:15713C>T, chrM:15742G>A, chrM:16227A>G, chrM:3671T>C, chrM:4247A>G, chrM:8217C>T, chrM:87A>G
A-T152C!
chrM:15785T>C
A2-x
chrM:11430G>A, chrM:16145A>G, chrM:7450G>A
A2m
chrM:14595G>A, chrM:15663A>G, chrM:8370C>T, chrM:8462G>A
chrM:6760G>A
chrM:13439G>A, chrM:15576G>A, chrM:15942C>T, chrM:16145A>G, chrM:6760G>A, chrM:8062T>C, chrM:8208C>G, chrM:9520A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 752851424 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
NA19660.final.cram	CRAM	15.5 GB	—	—	d8bba2fd1cc25b54a2cb784225f5266b	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.