SAMEA6604212

EXTERNAL

Sample

Accession: SAMEA6604212
Alias: NA19199
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:3641T>C

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L2
chrM:12194G>A, chrM:13013G>A, chrM:15813G>A, chrM:16138T>C, chrM:16187T>C, chrM:1840T>C, chrM:7629G>A, chrM:8644A>G, chrM:9538T>C
L2a'b'c'd
chrM:11367T>C
L2b'c'd
chrM:16142C>T, chrM:1756C>T
L2b'c
chrM:14533G>A, chrM:14640G>A, chrM:15942C>T, chrM:16190C>T, chrM:7047T>A, chrM:866G>A
L2b
chrM:1130C>T, chrM:13482A>G, chrM:15537C>A, chrM:15552G>A, chrM:15636G>A, chrM:16196T>C, chrM:1782A>G, chrM:3581A>G, chrM:3793T>C, chrM:4190A>G, chrM:4450C>T, chrM:4754C>A, chrM:5237T>C, chrM:6136C>T, chrM:7503C>T, chrM:7810G>A
chrM:16175A>G
chrM:16175A>G
L2b2
chrM:6037T>C, chrM:6229A>G, chrM:7926T>C
chrM:3641T>C
chrM:14254G>A, chrM:3641T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 750991682 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
NA19199.final.cram	CRAM	14.2 GB	—	—	e977767bb0eedcde1cc7869e54077967	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.