SAMEA6604182

EXTERNAL

Sample

Accession: SAMEA6604182
Alias: NA18930
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:7021G>A

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
chrM:12528A>G
chrM:12528A>G, chrM:15547T>C
L3b1a
chrM:10425A>G, chrM:13337C>A, chrM:15247A>G, chrM:15701C>T, chrM:2873C>T, chrM:5196G>A, chrM:5644T>C, chrM:8872C>T, chrM:9509A>G, chrM:9796G>A
chrM:9796G>A [Node1940]
chrM:15942C>T, chrM:9796G>A
L3b2
chrM:10063T>C, chrM:15950C>T, chrM:2843C>T
L3b2b
chrM:14973C>T, chrM:8476G>A, chrM:8490A>G
chrM:7021G>A
chrM:10683T>C, chrM:15227T>C, chrM:16191T>C, chrM:7021G>A, chrM:8521T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 746773272 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
NA18930.final.cram	CRAM	15.4 GB	—	—	e1b8627ec3a26624c0e1eb3dc898d591	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.