SAMEA6604135

EXTERNAL

Sample

Accession: SAMEA6604135
Alias: NA12386
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:7593A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
W
chrM:11097C>T, chrM:11837T>C, chrM:133G>A, chrM:15307G>C, chrM:15715C>T, chrM:16181A>G, chrM:16196T>C, chrM:16199G>A, chrM:2928A>G, chrM:4469G>A, chrM:4883G>A, chrM:667T>C, chrM:7674G>A, chrM:8417G>A
W1
chrM:7287C>T
W1c
chrM:13571A>G, chrM:16111T>C
W1c1
chrM:10627T>C, chrM:15607C>T
chrM:7593A>G
chrM:13034A>G, chrM:13351G>C, chrM:7593A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 750585432 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
NA12386.final.cram	CRAM	14.4 GB	—	—	28f3b317a8835839f2670180a57fbbae	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.