SAMEA6604111

EXTERNAL

Sample

Accession: SAMEA6604111
Alias: NA10861
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway H11a1

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
HV
chrM:11142A>G, chrM:14189T>C
H
chrM:2130G>A, chrM:6451T>C
H-T195C!
chrM:16187T>C
H11a
chrM:13182G>A, chrM:15716A>G, chrM:15734T>C, chrM:385T>G, chrM:7871T>C
H11a1
chrM:13809T>C, chrM:15701C>T, chrM:16135G>A, chrM:7329C>T, chrM:8321C>T, chrM:8739T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 741929498 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
NA10861.final.cram	CRAM	14.1 GB	—	—	5899399a071bb6f97539a77f4aa74438	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.