SAMEA6604085

EXTERNAL

Sample

Accession: SAMEA6604085
Alias: NA07045
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:2196C>T

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U5
chrM:13040T>C, chrM:15693C>T
U5a'b
chrM:2620T>C, chrM:8900G>A
U5a
chrM:14216A>G, chrM:15679C>T
U5a2
chrM:15949G>A
U5a2-C16294T
chrM:15717C>T
U5a2a1
chrM:13250A>G, chrM:15537C>A
chrM:2196C>T
chrM:10216C>T, chrM:15552G>A, chrM:2196C>T

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 778180012 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
NA07045.final.cram	CRAM	14.7 GB	—	—	9d8399c604a154e405934f5a66aac12c	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.