SAMEA6604053

EXTERNAL

Sample

Accession: SAMEA6604053
Alias: HG04135
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway M12a1b

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
M12a1
chrM:11453A>G, chrM:11781A>G, chrM:11795G>A, chrM:13992G>A, chrM:14150T>C, chrM:14433A>G, chrM:15713C>T, chrM:16117T>C, chrM:16119T>C, chrM:16120C>T, chrM:3593C>T, chrM:5003T>C
M12a1b
chrM:10448T>C, chrM:10776T>C, chrM:10860T>C, chrM:15317G>A, chrM:15595T>C, chrM:15942C>T, chrM:16138T>C, chrM:16187T>C, chrM:3044T>C, chrM:3985A>G, chrM:4915T>C, chrM:5869G>A, chrM:8540T>C, chrM:9178G>A

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 724974306 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG04135.final.cram	CRAM	15.0 GB	—	—	078732e56e196ba6760b9587948771b1	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.