SAMEA6604038

EXTERNAL

Sample

Accession: SAMEA6604038
Alias: HG03904
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:4396T>C

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
M5c
chrM:4742A>G
M5c1
chrM:1312G>A, chrM:4274C>T, chrM:5836T>C
chrM:4396T>C
chrM:12692A>G, chrM:13131G>A, chrM:13476A>G, chrM:14664A>G, chrM:15460A>G, chrM:16142C>T, chrM:4396T>C, chrM:8674A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 743125248 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG03904.final.cram	CRAM	16.1 GB	—	—	f4fae0210595e3b5b1278e17ea428dbb	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.