SAMEA6604011

EXTERNAL

Sample

Accession: SAMEA6604011
Alias: HG03683
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:5815T>C

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
M2
chrM:10506A>G, chrM:1204T>C, chrM:15093T>C, chrM:15697G>A, chrM:16440C>G
M2a'b
chrM:15742G>A, chrM:7925A>G
chrM:6070A>G
chrM:12677T>C, chrM:15743C>T, chrM:16187T>C, chrM:6070A>G, chrM:9322T>C
M2b
chrM:14189T>C, chrM:16174T>C, chrM:2255G>T, chrM:3053C>T, chrM:5167G>A, chrM:877A>G
chrM:5815T>C
chrM:13183C>T, chrM:13911T>C, chrM:14284G>A, chrM:15595T>C, chrM:16199G>A, chrM:5815T>C, chrM:5869G>A

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 768832834 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG03683.final.cram	CRAM	14.7 GB	—	—	083c3945202402b88e148d2eba49fe73	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.