SAMEA6603994

EXTERNAL

Sample

Accession: SAMEA6603994
Alias: HG03584
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:9250C>T

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
L3h1
chrM:11013A>G, chrM:1143G>A, chrM:15734T>C, chrM:15942C>T, chrM:3811A>G, chrM:4723C>T, chrM:7284T>C, chrM:8932T>C, chrM:8998G>A
L3h1b
chrM:13833G>A, chrM:15679C>A, chrM:16181A>C, chrM:9467A>G
L3h1b1a
chrM:11386G>A, chrM:15638A>G, chrM:15707A>G, chrM:2255G>A, chrM:3200T>C, chrM:6478A>G, chrM:8190A>G
chrM:9250C>T
chrM:10986C>T, chrM:15549T>C, chrM:16187T>C, chrM:9250C>T, chrM:9712A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 746303944 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG03584.final.cram	CRAM	14.8 GB	—	—	92ffb3e5cfec4e652524e2fcc331214a	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.