SAMEA6603948

EXTERNAL

Sample

Accession: SAMEA6603948
Alias: HG03200
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:16187T>C [Node1929]

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
chrM:12528A>G
chrM:12528A>G, chrM:15547T>C
L3d1'2'3'4'5'6
chrM:13309T>C, chrM:13707C>T, chrM:345T>C, chrM:4570G>A, chrM:6847A>G, chrM:8041T>C
L3d5a
chrM:11734T>C, chrM:15222A>G, chrM:15353G>A, chrM:15785T>C, chrM:6581A>G
chrM:12689A>G
chrM:12689A>G, chrM:12857A>G, chrM:13312G>A, chrM:15942C>T, chrM:16191T>C
chrM:16187T>C [Node1929]
chrM:16187T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 717221964 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG03200.final.cram	CRAM	13.7 GB	—	—	b5aa6f7a3f28276c9bb6ce776a9a080c	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.