SAMEA6603938

EXTERNAL

Sample

Accession: SAMEA6603938
Alias: HG03125
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:3503T>C [Node1381]

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L2
chrM:12194G>A, chrM:13013G>A, chrM:15813G>A, chrM:16138T>C, chrM:16187T>C, chrM:1840T>C, chrM:7629G>A, chrM:8644A>G, chrM:9538T>C
L2a'b'c'd
chrM:11367T>C
L2a
chrM:6598T>C
L2a1'2'3'4
chrM:11337G>A, chrM:13226A>G, chrM:13989A>G, chrM:15717C>T, chrM:6697C>T, chrM:7194A>G
L2a1
chrM:15207T>C, chrM:16174T>C
L2a1a
chrM:14667A>G, chrM:15052T>C, chrM:4708A>G
L2a1a2
chrM:15732A>G [Node1380]
chrM:15732A>G
chrM:3503T>C [Node1381]
chrM:15552G>A, chrM:3503T>C, chrM:8132C>T

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 757331022 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG03125.final.cram	CRAM	14.5 GB	—	—	989cee1d92a5707734512e127a1c5691	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.