SAMEA6603828

EXTERNAL

Sample

Accession: SAMEA6603828
Alias: HG02451
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:14166A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
L3e'i'k'x
chrM:10242A>G
L3e
chrM:13635T>C, chrM:1776T>C
L3e2
chrM:14328G>A, chrM:15743C>T, chrM:16187T>C
L3e2a
chrM:12528A>G, chrM:14292G>A, chrM:4246T>C
L3e2a1
chrM:16190C>T
L3e2a1b
chrM:5836T>C
L3e2a1b1
chrM:15822A>G
chrM:16492G>A
chrM:16492G>A
chrM:14166A>G
chrM:14166A>G, chrM:15192A>G, chrM:16190C>T

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 777983714 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG02451.final.cram	CRAM	14.3 GB	—	—	08c8ae0c30b4570ee72568e621f36cf2	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.