SAMEA6603801

EXTERNAL

Sample

Accession: SAMEA6603801
Alias: HG02106
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway D4h3a9

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
D
chrM:15785T>C, chrM:4306C>T, chrM:4601C>A
D4
chrM:14091C>T, chrM:2434G>A, chrM:7837C>T
D4h
chrM:15664A>G, chrM:2759T>C, chrM:3067T>C, chrM:4471T>C
D4h3a
chrM:12558G>A, chrM:15724C>T, chrM:15765T>C, chrM:2819T>C, chrM:3448C>T, chrM:5708G>A, chrM:8369A>G, chrM:8881C>T
D4h3a9
chrM:14284G>A, chrM:15785T>C, chrM:5446G>A, chrM:7302A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 956946980 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG02106.final.cram	CRAM	17.3 GB	—	—	3a06f91cc660e50a2d0710a41f5db223	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.