SAMEA6603788

EXTERNAL

Sample

Accession: SAMEA6603788
Alias: HG02024
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway M10a1a1b1

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
M10a1
chrM:10069G>A, chrM:12575A>G, chrM:133G>A, chrM:13925T>C, chrM:14463C>T, chrM:14494T>C, chrM:14641A>G, chrM:15734T>C, chrM:15942C>T, chrM:3563C>T, chrM:6673A>G, chrM:8216T>C, chrM:8279G>A
M10a1a
chrM:12558G>A, chrM:15516T>C, chrM:15552G>A
M10a1a1b1
chrM:15780T>C, chrM:15920A>G, chrM:16138T>C, chrM:9073C>T, chrM:9952A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 746128478 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG02024.final.cram	CRAM	14.2 GB	—	—	65e7c7fc6d3724a583a29f9e8c7293f1	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.