SAMEA6603697

EXTERNAL

Sample

Accession: SAMEA6603697
Alias: HG01463
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:2934A>G [Node611]

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
CZ
chrM:14910A>T, chrM:15721T>C, chrM:4138A>G, chrM:6619C>A, chrM:8007G>A
C1
chrM:11337G>A, chrM:12686A>G, chrM:13741T>C, chrM:15748T>C, chrM:2975T>A, chrM:8968A>G
C1d
chrM:15474A>G
C1d-C194T
C1d1
chrM:7120G>A
chrM:2934A>G [Node611]
chrM:11611T>A, chrM:13866C>T, chrM:15718C>T, chrM:16010C>T, chrM:16018C>T, chrM:16027G>A, chrM:16039G>A, chrM:2934A>G, chrM:3985A>G, chrM:7980G>A, chrM:9634C>T

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 743951660 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG01463.final.cram	CRAM	15.4 GB	—	—	df279b63a70a7540ff5607afa72efc72	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.