SAMEA6603687

EXTERNAL
Sample
Accession
SAMEA6603687
Alias
HG01358
Center
NYGC
Description
30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set
Y-DNA pathway R-BY39764
From de-novo tree placement
  1. Y
    245509 245509 ybp
  2. A0-T
    A2594, A2614, A2646, A2662, A2722, A2743, A2744, A2752, A2757, A2758, A2788, A2789, A2797, A2806, A2846, A2855, A2859, A2868, A2873, A2879, A2882, A2894, A2906, A2934, A2935, A2937, A2943, A2944, A2949, A2950, A2979, A2981, A2989, A3079, A3085, A4461, A4748, A5111, DU00186, DU00210, DU00221, DU00834, DU01556, DU02438, DU02444, DU02446, DU02455, DU02474, DU02479, DU02481, DU02482, DU02490, DU02500, DU02501, DU02505, DU02507, DU02511, DU02513, DU02516, DU02518, DU02529, DU02535, DU02540, DU02543, DU02550, DU02551, DU02559, DU02560, DU02568, DU02570, DU02572, DU02574, DU02600, DU02611, DU02618, DU02621, DU02622, DU02627, DU02629, DU02630, DU02641, DU02642, DU02656, DU02660, DU02665, DU02675, DU02678, DU02694, DU02697, DU02701, DU02704, DU02724, DU02726, DU02727, DU02734, DU02739, DU02741, DU02744, DU02747, DU02748, DU05466, DU05468, DU05475, DU05845, DU05941, DU06109, DU06117, DU06120, DU06573, DU06782, DU06784, DU06808, DU06815, DU06821, DU06824, DU06836, DU06847, DU06852, DU06853, DU06858, DU06859, DU06860, DU06891, DU06897, DU06903, DU06905, DU06913, DU06916, DU06924, DU06925, DU06950, DU06952, DU06960, DU06968, DU06991, DU06995, DU07000, DU07005, DU07006, DU07021, DU07023, DU07162, DU07170, DU07179, DU07180, DU07182, DU07183, DU07184, DU07188, DU07190, DU07191, DU07203, DU07204, DU07205, DU07206, DU07208, DU07209, DU07216, DU07217, DU07230, DU07234, DU07236, FGC24703, FGC24753, FGC24763, FGC24769, FGC24775, FGC24777, FGC24781, FGC24792, FGC24794, FGC24800, FGC24809, FGC24824, FGC24833, FGC24998, FGC25061, FGC25066, FGC25163, FGC25194, FGC25307, FGC25328, FGC25366, FGC25379, FGC25394, FGC25403, FGC25418, FGC25442, FGC25450, FGC25452, FGC25454, FGC25464, FGC25465, FGC25470, FGC25479, FGC25482, FGC25536, FGC25541, FGC25543, FGC25544, FGC25557, FGC25562, FGC25583, FGC25588, FGC25590, FGC25615, FGC25656, FGC25660, FGC25688, FGC25695, FGC25771, FGC25784, FGC25797, FGC25803, FGC25813, FGC25815, FGC25816, FGC25830, FGC25849, FGC25853, FGC25860, FGC25864, FGC25865, FGC25866, FGC25874, FGC25887, FGC25902, FGC25909, FGC25926, FGC25943, FGC25945, FGC25962, FGC26020, FGC26132, FGC26139, FGC26182, FGC26187, FGC26188, FGC26192, FGC26197, FGC26237, FGC26238, FGC26277, FGC26279, FGC26280, FGC26289, FGC26298, FGC26341, FGC26343, FGC26356, FGC26370, FGC26375, FGC26390, FGC26406, FGC26410, FGC26423, FGC26431, FGC26434, FGC26435, FGC26439, FGC26453, FGC26455, FGC26462, FGC26470, FGC26472, FGC26492, FGC26493, FGC26501, FGC26502, FGC26514, FGC26528, FGC26531, FGC26561, FGC26577, FGC26578, FGC26591, FGC26627, FGC26633, FGC26634, FGC26637, FGC26639, FGC26648, FGC26653, FGC26660, FGC26675, FGC26682, FGC26697, FGC26712, FGC26735, FGC26737, FGC26760, FGC26779, FGC26795, FGC26817, FGC26818, FGC26829, FGC26833, FGC26841, FGC26845, FGC26850, FGC26868, FGC26871, FGC26897, FGC26959, FGC26969, FGC26987, FGC27007, FGC27025, FGC27035, FGC27037, FGC27046, FGC27050, FGC27063, FGC27064, FGC27067, FGC27077, FGC27087, FGC27093, FGC27103, FGC27107, FGC27112, FGC27115, FGC27136, FGC27145, FGC27153, FGC27155, FGC27198, FGC27206, FGC27215, FGC27228, FGC27255, FGC27262, FGC27300, FGC27302, FGC27345, FGC27372, FGC27381, FGC27394, FGC27408, FGC27410, FGC27412, FGC27419, FGC27443, FGC27460, FGC27476, FGC27477, FGC27486, FGC27497, FGC27501, FGC27502, FGC27506, FGC27527, FGC27538, FGC27542, FGC27555, FGC27557, FGC27576, FGC27583, FGC27593, FGC27695, FGC27698, FGC27704, FGC27710, FGC27721, FGC27728, FGC27730, FGC27733, FGC27734, FGC27736, FGC27738, FGC27752, FGC27771, FGC27774, FGC27782, FGC27785, FGC27793, FGC27795, FGC27820, FGC27826, FGC27834, FGC27871, FGC27878, FGC27884, FGC27886, FGC27910, FGC27913, FGC27917, FGC27918, FGC27921, FGC27922, FGC27924, FGC27929, FGC27936, FGC27948, FGC27968, FGC27969, FGC27971, FGC27974, FGC28010, FT97438, L1090, L1098, L1099, L1101, L1116, L1118, L1120, L1123, L1127, L1129, L1130, L1132, L1135, L1142, L1143, L1145, L1150, PR4010, V1038, V1054, V1070, V1138, V1165, V1171, V1193, V1201, V1222, V1230, V1238, V1285, V1291, V1298, V1411, V1432, V1447, V1467, V1475, V1479, V1537, V1560, V1566, V1573, V1579, V1634, V1675, V1711, V1826, V1833, V1896, V1941, V2086, V2132, V2152, V2188, V2241, V2247, V2432, V2452, V2490, V2628, V2657, V2666, V2730, V2765, V2819, V2828, V2887, V2938, V2961, V2989, V3033, V3035, V3112, V3131, V3328, V3437, V3454, V3470, V3484, V3593, V3630, V3754, V3762, V3765, V3809, V3810, V3819, V3886, V3894, V3906, V3967, V3970, V3987, V4021, V4044, V4047, V4060, V4071, V4119, V4129, V4151, V4172, V4195, V4375, V4421, V4492, V4549, V4567, V4582, V4622, V4673, V4676, V4942, V4955, V4981, V5000, V5024, V5028, V5077, V5094, V5209, V5219, V5231, V5380, V5482, V5511, V5512, V5519, V5545, V5546, V5561, V5566, V5584, V5595, V5628, V5947, V5957, V5975, V5990, V6008, V6027, V6053, V6068, V6102, V6126, V6142, V6184, V6189, V6192, V6230, V6240, V6296, V6362, V6492, V6493, V6566, V6585, V6637, V6644, V6663, V6680, V6723, V6743, V6754, V6757, V6784, V6785, V6822, V6863, V6900, V6906, V6915, V6920, V7024, V7027, V7029, V7086, V7470, V7487, V7495, V7496, V7506, V7517, V7539, V7556, V7613, V7623, V7673, V7684, V7691, V7702, V7725, V7804, V7871, V7887, V7941, V7966, V7995, V8003
    221532 163352 ybp
  3. A1
    A4698, A4733, A4739, A4762, A4825, A4826, A4951, BY145693, DU00226, DU00336, DU00345, DU00907, DU01110, DU01277, DU01311, DU01501, DU01807, DU02412, DU02441, DU02453, DU02473, DU02475, DU02476, DU02534, DU02542, DU02554, DU02564, DU02565, DU02581, DU02583, DU02589, DU02693, DU02703, DU02717, DU02745, DU05463, DU05472, DU05673, DU06108, DU06127, DU06128, DU06131, DU06135, DU06136, DU06774, DU06775, DU06778, DU06779, DU06790, DU06802, DU06805, DU06814, DU06816, DU06864, DU06865, DU06870, DU06877, DU06878, DU06879, DU06886, DU06887, DU06907, DU06908, DU06910, DU06926, DU06928, DU06929, DU06938, DU06951, DU06958, DU06963, DU06986, DU06993, DU06997, DU07002, DU07004, DU07013, DU07015, DU07028, DU07029, DU07159, DU07161, DU07175, DU07189, DU07228, FGC24678, FGC24722, FGC24725, L1002, L1004, L1005, L1084, L985, L986, P305, V1130, V1360, V1522, V168, V1793, V1808, V2049, V2070, V2349, V2368, V238, V241, V250, V2613, V2732, V2842, V2843, V2980, V3222, V3315, V3624, V3653, V3682, V3711, V3832, V3937, V3955, V4189, V4411, V4437, V4508, V4581, V5229, V6309, V6360, V6435, V6476, V6594, V6632, V6659, V7529, V7895, V7964, Z7768, Z8464, Z8553, Z8555, Z8559, Z8723, Z8757, Z8772, Z8773, Z8784, Z8787, Z8794, Z8802, Z8807, Z8809, Z8824, Z8829, Z8830, Z8834, Z8839, Z8883, Z8892, Z8903, Z8925, Z8983, Z9014, Z9033, Z9047, Z9116, Z9128, Z9164, Z9185, Z9186, Z9292, Z9301, Z9309, Z9353, Z9360, Z9418, Z9446, Z9457, Z9467, Z9495, Z9523, Z9569, Z9574, Z9590, Z9616, Z9619, Z9629, Z9636, Z9641, Z9648, Z9649, Z9661, Z9719, Z9749, Z9789, Z9795, Z9796, Z9808, Z9820, Z9830, Z9832, Z9840, Z9859, Z9874
    152141 132724 ybp
  4. A1b
    DU01149, DU02506, DU02632, DU02636, DU02728, DU05454, DU05476, DU06106, DU06119, DU06572, DU06844, DU06851, DU06861, DU06867, DU06898, DU06906, DU06918, DU06940, DU06949, DU06961, DU06964, DU06998, DU07009, DU07047, FGC24598, FGC24604, FGC24611, FGC24616, FGC24627, L1009, L1013, L1053, L989, P108, V1820, V221, V2590, V3785, V4076, Y8279, Z11891, Z11899, Z11900, Z11906, Z11907, Z11910, Z11913, Z11916, Z11918, Z11919, Z17892, Z17895, Z17896, Z17897
    130265 125244 ybp
  5. BT
    DU02528, M299, M42, M9118, M9336, M94, PF1284, PF6234
    117150 116364 ybp
  6. CT
    A4776, CTS11575, CTS5457, CTS7295, DU00344, DU00349, DU00510, DU01057, DU01121, DU01173, DU01205, DU01216, DU01622, DU02411, DU02431, DU02432, DU02442, DU02443, DU02445, DU02447, DU02449, DU02450, DU02469, DU02480, DU02486, DU02508, DU02517, DU02519, DU02526, DU02530, DU02531, DU02539, DU02545, DU02552, DU02555, DU02580, DU02582, DU02586, DU02590, DU02598, DU02601, DU02603, DU02604, DU02605, DU02610, DU02614, DU02617, DU02628, DU02639, DU02651, DU02653, DU02661, DU02672, DU02702, DU02706, DU02735, DU02742, DU05451, DU05452, DU05455, DU05458, DU05462, DU05474, DU05478, DU05480, DU05481, DU06124, DU06125, DU06133, DU06134, DU06227, DU06551, DU06571, DU06730, DU06765, DU06770, DU06776, DU06781, DU06788, DU06793, DU06794, DU06796, DU06798, DU06799, DU06801, DU06806, DU06811, DU06817, DU06822, DU06828, DU06829, DU06830, DU06839, DU06841, DU06842, DU06846, DU06848, DU06849, DU06855, DU06866, DU06872, DU06873, DU06882, DU06888, DU06892, DU06893, DU06894, DU06895, DU06896, DU06899, DU06914, DU06927, DU06932, DU06935, DU06942, DU06947, DU06982, DU06989, DU06994, DU07007, DU07010, DU07012, DU07014, DU07016, DU07017, DU07018, DU07025, DU07027, DU07157, DU07158, DU07163, DU07172, DU07174, DU07178, DU07187, DU07193, DU07194, DU07198, DU07199, DU07211, DU07212, DU07214, DU07227, DU07233, DU07281, DU07284, DU07286, FGC24511, FGC24531, FGC25345, L1492, M11839, M168, M294, M5576, M5577, M5585, M5587, M5588, M5589, M5591, M5597, M5599, M5601, M5603, M5605, M5606, M5607, M5608, M5609, M5610, M5611, M5612, M5613, M5614, M5615, M5616, M5617, M5618, M5619, M5620, M5622, M5624, M5625, M5626, M5627, M5628, M5629, M5631, M5632, M5633, M5636, M5639, M5640, M5641, M5643, M5648, M5650, M5651, M5652, M5655, M5656, M5660, M5661, M5662, M5669, M5671, M5675, M5676, M5679, M5680, M5681, M5682, M5683, M5684, M5690, M5691, M5694, M5695, M5698, M5699, M5706, M5707, M5708, M5711, M5712, M5713, M5715, M5716, M5719, M5721, M5723, M5724, M5726, M5730, M5737, M5741, M5745, M5747, M5749, M5750, M5751, M5752, M5754, M5756, M5757, M5758, M5760, M5762, M5765, M5766, M5769, M5770, M5771, M5774, M5775, M5777, M5778, M5781, M5782, M5783, M5784, M5785, M5786, M5788, M5790, M5794, M5795, M5796, M5797, M5800, M5808, M5814, M5817, M5819, M5821, M5822, M5823, M8948, M9022, P9, PF1016, PF228, PF316, PF342, PF500, PF667, V2472, V3858, Y1455, Y1526, Y1817, Z17711
    105901 78107 ybp
  7. CF
    M3727, P143
    77339 77045 ybp
  8. F
    CTS3868, CTS7981, DU00219, DU00220, DU00939, DU01072, DU01073, DU01109, DU01262, DU01451, DU01644, DU02454, DU02465, DU02512, DU02523, DU02533, DU02556, DU02562, DU02567, DU02595, DU02596, DU02612, DU02613, DU02615, DU02623, DU02646, DU02648, DU02664, DU02673, DU02676, DU02725, DU02731, DU02732, DU05477, DU05727, DU05731, DU06729, DU06780, DU06783, DU06823, DU06831, DU06835, DU06840, DU06869, DU06876, DU06889, DU06901, DU06902, DU06920, DU06921, DU06934, DU06936, DU06955, DU06957, DU06962, DU06965, DU06990, DU06992, DU07019, DU07171, DU07195, DU07200, DU07215, DU07225, DU07232, DU07262, DU07283, F1046, F1089, F1149, F1209, F1285, F1320, F1416, F1704, F1714, F1753, F1767, F2142, F2155, F2245, F773, IMS-JST1552, IMS-JST305, L132, L313, L350, L352, L468, L498, L851, L882, M3637, M3650, M3686, M3696, M3701, M3722, M3723, M3735, M3736, M3742, M3767, M3771, M89, P133, P134, P135, P136, P138, P14, P140, P141, P145, P146, P148, P149, P151, P157, P158, P160, P161, P163, P166, P187, P316, PF1914, PF2591, PF2608, PF2611, PF2613, PF2615, PF2627, PF2628, PF2629, PF2631, PF2639, PF2643, PF2647, PF2662, PF2666, PF2667, PF2671, PF2693, PF2695, PF2722, PF2732, PF2736, PF2737, PF2739, PF2742, PF2747, PF2748, PF2749, PF2750, PF2758, PF2772, Page38, Page80, V205, Y1463, YSC1298, YSC1308
    72917 57455 ybp
  9. GHIJK
    M3658
    57466 57267 ybp
  10. HIJK
    DU00852, M578
    57188 56897 ybp
  11. IJK
    A3081, A4761, A4763, DU06911, DU07003, L1235, L15, L16, M2682, M2683, M2696, PR2921, V2495, V2663, V2909, V3596, V5381, YP1879, YSC1319
    56698 56019 ybp
  12. K
    CTS2071, DU02645, DU05469, DU06123, DU06786, DU06912, F2006, F2548, L819, M2351, M2685, M2689, M2694, M2695, M9, P128, P131, P132, V104
    56156 54202 ybp
  13. K-M526
    A4747, DU06103, M526
    54315 54117 ybp
  14. K-YSC0000186
    DU02464, DU02770, DU06915, YSC186
    54026 53735 ybp
  15. P
    CTS12299, DU00270, DU01012, DU01128, DU01495, DU02437, DU02483, DU02484, DU02485, DU02491, DU02497, DU02537, DU02563, DU02579, DU02584, DU02585, DU02593, DU02609, DU02616, DU02635, DU02659, DU02669, DU02670, DU02681, DU02695, DU02712, DU02720, DU02733, DU02746, DU05473, DU06130, DU06575, DU06576, DU06577, DU06797, DU06800, DU06807, DU06809, DU06810, DU06813, DU06818, DU06826, DU06832, DU06838, DU06854, DU06875, DU06880, DU06881, DU06883, DU06890, DU06904, DU06909, DU06922, DU06948, DU06966, DU06983, DU07001, DU07011, DU07024, DU07026, DU07155, DU07223, DU07266, DU07268, DU07301, F1660, F4, F506, F640, F653, FGC285, FGC83, L268, L536, L721, L741, L768, L781, L82, M1103, M1109, M1160, M1184, M1185, M1186, M1188, M1189, M1190, M1191, M1192, M1193, M1195, M1196, M1198, M1199, M1202, M1204, M1210, M1211, M1212, M1214, M1215, M1216, M1218, M1219, M1222, M1224, M1225, M1226, M1227, M1228, M1229, M1231, M1232, M1235, M1239, M1240, M1241, M1248, M1250, M1252, M1255, M1256, M1258, M1260, M1263, M1264, M1265, M1267, M1269, M1272, M1273, M1274, M45, M5579, N12, P207, P228, P235, P237, P239, P240, P243, P244, P281, P282, P283, P284, P295, PF5471, PF5483, PF5511, PF5867, PF5882, PF5982, PF5999, Page83, V1079, V231, V2974, V5158, V7434, Y451
    50961 35990 ybp
  16. R
    CTS3622, DU01100, DU02488, DU02515, DU02592, DU02606, DU02710, DU06578, DU06772, DU06773, DU06795, DU06874, DU06953, DU06999, DU07156, FGC204, FGC209, FGC214, M207, M603, M607, M613, M614, M620, M628, M642, M667, M702, M703, M705, M734, M764, M789, M792, M805, P224, P229, P232, P280, P285, SK2006
    33223 29587 ybp
  17. R-M173
    DU00260, DU02503, DU02514, DU02541, DU02599, DU06129, DU06981, DU06985, DU07213, M621, M706, M711, M781, M785, MF16853, P233, P234, P236, P238, P242, P245, P286, PAGES29, PF5997, S1, V5063, YSC182
    27073 24423 ybp
  18. R-M343
    A702, DU02498, DU02624, DU06151, DU06785, DU06820, DU06871, DU06988, DU06996, DU07285, F1811, FGC36, L1345, L278, L506, L754, L761, L774, L822, M12190, M343, MF795714, P25, PF6249, PF6259, PF6263, PF6270, PF6271, PF6272, V1532, V1980, V4199, YSC1279
    21961 19016 ybp
  19. R-L389
    L388, L389
    18550 18257 ybp
  20. R-P297
    CTS10834, CTS11468, CTS11985, CTS12478, CTS2466, CTS2664, CTS3575, CTS6832, CTS7400, CTS7659, CTS8591, CTS8627, CTS8665, DU00365, DU02494, DU02527, DU02558, DU02594, DU02607, DU02633, DU02643, DU02680, DU02723, DU05450, DU05457, DU05479, DU06122, DU06771, DU06777, DU06787, DU06819, DU06827, DU06837, DU06843, DU06856, DU06863, DU06884, DU06900, DU06923, DU06930, DU06939, DU06959, DU07160, DU07168, DU07173, DU07192, DU07196, DU07231, DU07267, DU07300, F1794, FGC37, FGC76, L1063, L1348, L1350, L150, L265, L407, L479, L482, L500, L502, L585, L749, L752, L753, L762, M12189, M269, M8208, PF6265, PF6406, PF6409, PF6425, PF6426, PF6428, PF6429, PF6430, PF6434, PF6435, PF6438, PF6443, PF6444, PF6448, PF6463, PF6466, PF6485, PF6494, PF6495, PF6497, PF6498, PF6500, PF6504, PF6506, PF6507, PF6508, PF6509, PF6518, PF6524, PF6525, S10, S17, V1699, V1741, V3721, V3993, YSC167, YSC213, YSC294
    16348 6499 ybp
  21. R-L23
    DU06792, L23, L478
    6293 5911 ybp
  22. R-L51
    DU06954, DU07020, E207, L51
    5863 5484 ybp
  23. R-P310
    DU02472, DU02679, DU06010, FGC44, L11, L151, L52, P310, P311, PF6540, PF6543
    5798 4837 ybp
  24. R-P312
    DU06132, MF42709, P312
    5028 4759 ybp
  25. R-U152
    S28
    4727 4549 ybp
  26. R-L2
    L2
    4571 4394 ybp
  27. R-Z367
    DU02549, S255
    4496 4318 ybp
  28. R-L20
    DU02456, DU02686, L20, Z383
    4534 4265 ybp
  29. R-Z1909
    A1510, A25986, Y187878, Z1909, Z1910, Z1911
    4508 4044 ybp
  30. R-CTS7917
    A25983, A25985, A25987, CTS10161, CTS10658, CTS11289, CTS2004, CTS3091, CTS3432, CTS4629, CTS5978, CTS7917, CTS8874, FT294807, FT295668, FT296600, FT296734, FT296768, FT297160, FT297515, FT297858, FT298001, FT298875, FT298981, FT299243, FT299321, FT299611, FT319369, FT321113, FT370183, FT425868, FT439800, FTA6172, MF41103, Y22248, Y22249, Y22250, Y22955, Y22956, Y22957, Y22958, Y22959, Y72065, Y80735
    5299 1176 ybp
  31. R-BY39764
    BY39764, BY39765, C120895, C125389, C132244, DU01091, DU01953, DU03344, DU03421, DU06494, DU07142, FT324789, FT325835, FT326110, MF747518, Y559068, Y655303
    1525 554 ybp
mtDNA pathway chrM:9049A>C
From de-novo tree placement
  1. L1'2'3'4'5'6'7
    chrM:16181G>A
  2. L2'3'4'5'6'7
    chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
  3. L2'3'4'6
    chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
  4. L3'4
    chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
  5. L3
    chrM:193A>G, chrM:442A>G
  6. N
    chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
  7. A
    chrM:15713C>T, chrM:15742G>A, chrM:16227A>G, chrM:3671T>C, chrM:4247A>G, chrM:8217C>T, chrM:87A>G
  8. A-T152C!
    chrM:15785T>C
  9. A2-x
    chrM:11430G>A, chrM:16145A>G, chrM:7450G>A
  10. A2w
    chrM:10439G>A, chrM:6547A>G
  11. chrM:9049A>C
    chrM:9049A>C, chrM:9316C>T
Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files
Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 790427010 · Read length: — · Date: 2020-04-21
File Format Size Reference Aligner md5
HG01358.final.cram CRAM 14.9 GB fd72c4ed1905ba3583cf7fb728821d29 Download
Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.