SAMEA6603637

EXTERNAL
Sample
Accession
SAMEA6603637
Alias
HG00738
Center
NYGC
Description
30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set
Y-DNA pathway R-C141297
From de-novo tree placement
  1. Y
    245509 245509 ybp
  2. A0-T
    A2594, A2614, A2646, A2662, A2722, A2743, A2744, A2752, A2757, A2758, A2788, A2789, A2797, A2806, A2846, A2855, A2859, A2868, A2873, A2879, A2882, A2894, A2906, A2934, A2935, A2937, A2943, A2944, A2949, A2950, A2979, A2981, A2989, A3079, A3085, A4461, A4748, A5111, DU00186, DU00210, DU00221, DU00834, DU01556, DU02438, DU02444, DU02446, DU02455, DU02474, DU02479, DU02481, DU02482, DU02490, DU02500, DU02501, DU02505, DU02507, DU02511, DU02513, DU02516, DU02518, DU02529, DU02535, DU02540, DU02543, DU02550, DU02551, DU02559, DU02560, DU02568, DU02570, DU02572, DU02574, DU02600, DU02611, DU02618, DU02621, DU02622, DU02627, DU02629, DU02630, DU02641, DU02642, DU02656, DU02660, DU02665, DU02675, DU02678, DU02694, DU02697, DU02701, DU02704, DU02724, DU02726, DU02727, DU02734, DU02739, DU02741, DU02744, DU02747, DU02748, DU05466, DU05468, DU05475, DU05845, DU05941, DU06109, DU06117, DU06120, DU06573, DU06782, DU06784, DU06808, DU06815, DU06821, DU06824, DU06836, DU06847, DU06852, DU06853, DU06858, DU06859, DU06860, DU06891, DU06897, DU06903, DU06905, DU06913, DU06916, DU06924, DU06925, DU06950, DU06952, DU06960, DU06968, DU06991, DU06995, DU07000, DU07005, DU07006, DU07021, DU07023, DU07162, DU07170, DU07179, DU07180, DU07182, DU07183, DU07184, DU07188, DU07190, DU07191, DU07203, DU07204, DU07205, DU07206, DU07208, DU07209, DU07216, DU07217, DU07230, DU07234, DU07236, FGC24703, FGC24753, FGC24763, FGC24769, FGC24775, FGC24777, FGC24781, FGC24792, FGC24794, FGC24800, FGC24809, FGC24824, FGC24833, FGC24998, FGC25061, FGC25066, FGC25163, FGC25194, FGC25307, FGC25328, FGC25366, FGC25379, FGC25394, FGC25403, FGC25418, FGC25442, FGC25450, FGC25452, FGC25454, FGC25464, FGC25465, FGC25470, FGC25479, FGC25482, FGC25536, FGC25541, FGC25543, FGC25544, FGC25557, FGC25562, FGC25583, FGC25588, FGC25590, FGC25615, FGC25656, FGC25660, FGC25688, FGC25695, FGC25771, FGC25784, FGC25797, FGC25803, FGC25813, FGC25815, FGC25816, FGC25830, FGC25849, FGC25853, FGC25860, FGC25864, FGC25865, FGC25866, FGC25874, FGC25887, FGC25902, FGC25909, FGC25926, FGC25943, FGC25945, FGC25962, FGC26020, FGC26132, FGC26139, FGC26182, FGC26187, FGC26188, FGC26192, FGC26197, FGC26237, FGC26238, FGC26277, FGC26279, FGC26280, FGC26289, FGC26298, FGC26341, FGC26343, FGC26356, FGC26370, FGC26375, FGC26390, FGC26406, FGC26410, FGC26423, FGC26431, FGC26434, FGC26435, FGC26439, FGC26453, FGC26455, FGC26462, FGC26470, FGC26472, FGC26492, FGC26493, FGC26501, FGC26502, FGC26514, FGC26528, FGC26531, FGC26561, FGC26577, FGC26578, FGC26591, FGC26627, FGC26633, FGC26634, FGC26637, FGC26639, FGC26648, FGC26653, FGC26660, FGC26675, FGC26682, FGC26697, FGC26712, FGC26735, FGC26737, FGC26760, FGC26779, FGC26795, FGC26817, FGC26818, FGC26829, FGC26833, FGC26841, FGC26845, FGC26850, FGC26868, FGC26871, FGC26897, FGC26959, FGC26969, FGC26987, FGC27007, FGC27025, FGC27035, FGC27037, FGC27046, FGC27050, FGC27063, FGC27064, FGC27067, FGC27077, FGC27087, FGC27093, FGC27103, FGC27107, FGC27112, FGC27115, FGC27136, FGC27145, FGC27153, FGC27155, FGC27198, FGC27206, FGC27215, FGC27228, FGC27255, FGC27262, FGC27300, FGC27302, FGC27345, FGC27372, FGC27381, FGC27394, FGC27408, FGC27410, FGC27412, FGC27419, FGC27443, FGC27460, FGC27476, FGC27477, FGC27486, FGC27497, FGC27501, FGC27502, FGC27506, FGC27527, FGC27538, FGC27542, FGC27555, FGC27557, FGC27576, FGC27583, FGC27593, FGC27695, FGC27698, FGC27704, FGC27710, FGC27721, FGC27728, FGC27730, FGC27733, FGC27734, FGC27736, FGC27738, FGC27752, FGC27771, FGC27774, FGC27782, FGC27785, FGC27793, FGC27795, FGC27820, FGC27826, FGC27834, FGC27871, FGC27878, FGC27884, FGC27886, FGC27910, FGC27913, FGC27917, FGC27918, FGC27921, FGC27922, FGC27924, FGC27929, FGC27936, FGC27948, FGC27968, FGC27969, FGC27971, FGC27974, FGC28010, FT97438, L1090, L1098, L1099, L1101, L1116, L1118, L1120, L1123, L1127, L1129, L1130, L1132, L1135, L1142, L1143, L1145, L1150, PR4010, V1038, V1054, V1070, V1138, V1165, V1171, V1193, V1201, V1222, V1230, V1238, V1285, V1291, V1298, V1411, V1432, V1447, V1467, V1475, V1479, V1537, V1560, V1566, V1573, V1579, V1634, V1675, V1711, V1826, V1833, V1896, V1941, V2086, V2132, V2152, V2188, V2241, V2247, V2432, V2452, V2490, V2628, V2657, V2666, V2730, V2765, V2819, V2828, V2887, V2938, V2961, V2989, V3033, V3035, V3112, V3131, V3328, V3437, V3454, V3470, V3484, V3593, V3630, V3754, V3762, V3765, V3809, V3810, V3819, V3886, V3894, V3906, V3967, V3970, V3987, V4021, V4044, V4047, V4060, V4071, V4119, V4129, V4151, V4172, V4195, V4375, V4421, V4492, V4549, V4567, V4582, V4622, V4673, V4676, V4942, V4955, V4981, V5000, V5024, V5028, V5077, V5094, V5209, V5219, V5231, V5380, V5482, V5511, V5512, V5519, V5545, V5546, V5561, V5566, V5584, V5595, V5628, V5947, V5957, V5975, V5990, V6008, V6027, V6053, V6068, V6102, V6126, V6142, V6184, V6189, V6192, V6230, V6240, V6296, V6362, V6492, V6493, V6566, V6585, V6637, V6644, V6663, V6680, V6723, V6743, V6754, V6757, V6784, V6785, V6822, V6863, V6900, V6906, V6915, V6920, V7024, V7027, V7029, V7086, V7470, V7487, V7495, V7496, V7506, V7517, V7539, V7556, V7613, V7623, V7673, V7684, V7691, V7702, V7725, V7804, V7871, V7887, V7941, V7966, V7995, V8003
    221532 163352 ybp
  3. A1
    A4698, A4733, A4739, A4762, A4825, A4826, A4951, BY145693, DU00226, DU00336, DU00345, DU00907, DU01110, DU01277, DU01311, DU01501, DU01807, DU02412, DU02441, DU02453, DU02473, DU02475, DU02476, DU02534, DU02542, DU02554, DU02564, DU02565, DU02581, DU02583, DU02589, DU02693, DU02703, DU02717, DU02745, DU05463, DU05472, DU05673, DU06108, DU06127, DU06128, DU06131, DU06135, DU06136, DU06774, DU06775, DU06778, DU06779, DU06790, DU06802, DU06805, DU06814, DU06816, DU06864, DU06865, DU06870, DU06877, DU06878, DU06879, DU06886, DU06887, DU06907, DU06908, DU06910, DU06926, DU06928, DU06929, DU06938, DU06951, DU06958, DU06963, DU06986, DU06993, DU06997, DU07002, DU07004, DU07013, DU07015, DU07028, DU07029, DU07159, DU07161, DU07175, DU07189, DU07228, FGC24678, FGC24722, FGC24725, L1002, L1004, L1005, L1084, L985, L986, P305, V1130, V1360, V1522, V168, V1793, V1808, V2049, V2070, V2349, V2368, V238, V241, V250, V2613, V2732, V2842, V2843, V2980, V3222, V3315, V3624, V3653, V3682, V3711, V3832, V3937, V3955, V4189, V4411, V4437, V4508, V4581, V5229, V6309, V6360, V6435, V6476, V6594, V6632, V6659, V7529, V7895, V7964, Z7768, Z8464, Z8553, Z8555, Z8559, Z8723, Z8757, Z8772, Z8773, Z8784, Z8787, Z8794, Z8802, Z8807, Z8809, Z8824, Z8829, Z8830, Z8834, Z8839, Z8883, Z8892, Z8903, Z8925, Z8983, Z9014, Z9033, Z9047, Z9116, Z9128, Z9164, Z9185, Z9186, Z9292, Z9301, Z9309, Z9353, Z9360, Z9418, Z9446, Z9457, Z9467, Z9495, Z9523, Z9569, Z9574, Z9590, Z9616, Z9619, Z9629, Z9636, Z9641, Z9648, Z9649, Z9661, Z9719, Z9749, Z9789, Z9795, Z9796, Z9808, Z9820, Z9830, Z9832, Z9840, Z9859, Z9874
    152141 132724 ybp
  4. A1b
    DU01149, DU02506, DU02632, DU02636, DU02728, DU05454, DU05476, DU06106, DU06119, DU06572, DU06844, DU06851, DU06861, DU06867, DU06898, DU06906, DU06918, DU06940, DU06949, DU06961, DU06964, DU06998, DU07009, DU07047, FGC24598, FGC24604, FGC24611, FGC24616, FGC24627, L1009, L1013, L1053, L989, P108, V1820, V221, V2590, V3785, V4076, Y8279, Z11891, Z11899, Z11900, Z11906, Z11907, Z11910, Z11913, Z11916, Z11918, Z11919, Z17892, Z17895, Z17896, Z17897
    130265 125244 ybp
  5. BT
    DU02528, M299, M42, M9118, M9336, M94, PF1284, PF6234
    117150 116364 ybp
  6. CT
    A4776, CTS11575, CTS5457, CTS7295, DU00344, DU00349, DU00510, DU01057, DU01121, DU01173, DU01205, DU01216, DU01622, DU02411, DU02431, DU02432, DU02442, DU02443, DU02445, DU02447, DU02449, DU02450, DU02469, DU02480, DU02486, DU02508, DU02517, DU02519, DU02526, DU02530, DU02531, DU02539, DU02545, DU02552, DU02555, DU02580, DU02582, DU02586, DU02590, DU02598, DU02601, DU02603, DU02604, DU02605, DU02610, DU02614, DU02617, DU02628, DU02639, DU02651, DU02653, DU02661, DU02672, DU02702, DU02706, DU02735, DU02742, DU05451, DU05452, DU05455, DU05458, DU05462, DU05474, DU05478, DU05480, DU05481, DU06124, DU06125, DU06133, DU06134, DU06227, DU06551, DU06571, DU06730, DU06765, DU06770, DU06776, DU06781, DU06788, DU06793, DU06794, DU06796, DU06798, DU06799, DU06801, DU06806, DU06811, DU06817, DU06822, DU06828, DU06829, DU06830, DU06839, DU06841, DU06842, DU06846, DU06848, DU06849, DU06855, DU06866, DU06872, DU06873, DU06882, DU06888, DU06892, DU06893, DU06894, DU06895, DU06896, DU06899, DU06914, DU06927, DU06932, DU06935, DU06942, DU06947, DU06982, DU06989, DU06994, DU07007, DU07010, DU07012, DU07014, DU07016, DU07017, DU07018, DU07025, DU07027, DU07157, DU07158, DU07163, DU07172, DU07174, DU07178, DU07187, DU07193, DU07194, DU07198, DU07199, DU07211, DU07212, DU07214, DU07227, DU07233, DU07281, DU07284, DU07286, FGC24511, FGC24531, FGC25345, L1492, M11839, M168, M294, M5576, M5577, M5585, M5587, M5588, M5589, M5591, M5597, M5599, M5601, M5603, M5605, M5606, M5607, M5608, M5609, M5610, M5611, M5612, M5613, M5614, M5615, M5616, M5617, M5618, M5619, M5620, M5622, M5624, M5625, M5626, M5627, M5628, M5629, M5631, M5632, M5633, M5636, M5639, M5640, M5641, M5643, M5648, M5650, M5651, M5652, M5655, M5656, M5660, M5661, M5662, M5669, M5671, M5675, M5676, M5679, M5680, M5681, M5682, M5683, M5684, M5690, M5691, M5694, M5695, M5698, M5699, M5706, M5707, M5708, M5711, M5712, M5713, M5715, M5716, M5719, M5721, M5723, M5724, M5726, M5730, M5737, M5741, M5745, M5747, M5749, M5750, M5751, M5752, M5754, M5756, M5757, M5758, M5760, M5762, M5765, M5766, M5769, M5770, M5771, M5774, M5775, M5777, M5778, M5781, M5782, M5783, M5784, M5785, M5786, M5788, M5790, M5794, M5795, M5796, M5797, M5800, M5808, M5814, M5817, M5819, M5821, M5822, M5823, M8948, M9022, P9, PF1016, PF228, PF316, PF342, PF500, PF667, V2472, V3858, Y1455, Y1526, Y1817, Z17711
    105901 78107 ybp
  7. CF
    M3727, P143
    77339 77045 ybp
  8. F
    CTS3868, CTS7981, DU00219, DU00220, DU00939, DU01072, DU01073, DU01109, DU01262, DU01451, DU01644, DU02454, DU02465, DU02512, DU02523, DU02533, DU02556, DU02562, DU02567, DU02595, DU02596, DU02612, DU02613, DU02615, DU02623, DU02646, DU02648, DU02664, DU02673, DU02676, DU02725, DU02731, DU02732, DU05477, DU05727, DU05731, DU06729, DU06780, DU06783, DU06823, DU06831, DU06835, DU06840, DU06869, DU06876, DU06889, DU06901, DU06902, DU06920, DU06921, DU06934, DU06936, DU06955, DU06957, DU06962, DU06965, DU06990, DU06992, DU07019, DU07171, DU07195, DU07200, DU07215, DU07225, DU07232, DU07262, DU07283, F1046, F1089, F1149, F1209, F1285, F1320, F1416, F1704, F1714, F1753, F1767, F2142, F2155, F2245, F773, IMS-JST1552, IMS-JST305, L132, L313, L350, L352, L468, L498, L851, L882, M3637, M3650, M3686, M3696, M3701, M3722, M3723, M3735, M3736, M3742, M3767, M3771, M89, P133, P134, P135, P136, P138, P14, P140, P141, P145, P146, P148, P149, P151, P157, P158, P160, P161, P163, P166, P187, P316, PF1914, PF2591, PF2608, PF2611, PF2613, PF2615, PF2627, PF2628, PF2629, PF2631, PF2639, PF2643, PF2647, PF2662, PF2666, PF2667, PF2671, PF2693, PF2695, PF2722, PF2732, PF2736, PF2737, PF2739, PF2742, PF2747, PF2748, PF2749, PF2750, PF2758, PF2772, Page38, Page80, V205, Y1463, YSC1298, YSC1308
    72917 57455 ybp
  9. GHIJK
    M3658
    57466 57267 ybp
  10. HIJK
    DU00852, M578
    57188 56897 ybp
  11. IJK
    A3081, A4761, A4763, DU06911, DU07003, L1235, L15, L16, M2682, M2683, M2696, PR2921, V2495, V2663, V2909, V3596, V5381, YP1879, YSC1319
    56698 56019 ybp
  12. K
    CTS2071, DU02645, DU05469, DU06123, DU06786, DU06912, F2006, F2548, L819, M2351, M2685, M2689, M2694, M2695, M9, P128, P131, P132, V104
    56156 54202 ybp
  13. K-M526
    A4747, DU06103, M526
    54315 54117 ybp
  14. K-YSC0000186
    DU02464, DU02770, DU06915, YSC186
    54026 53735 ybp
  15. P
    CTS12299, DU00270, DU01012, DU01128, DU01495, DU02437, DU02483, DU02484, DU02485, DU02491, DU02497, DU02537, DU02563, DU02579, DU02584, DU02585, DU02593, DU02609, DU02616, DU02635, DU02659, DU02669, DU02670, DU02681, DU02695, DU02712, DU02720, DU02733, DU02746, DU05473, DU06130, DU06575, DU06576, DU06577, DU06797, DU06800, DU06807, DU06809, DU06810, DU06813, DU06818, DU06826, DU06832, DU06838, DU06854, DU06875, DU06880, DU06881, DU06883, DU06890, DU06904, DU06909, DU06922, DU06948, DU06966, DU06983, DU07001, DU07011, DU07024, DU07026, DU07155, DU07223, DU07266, DU07268, DU07301, F1660, F4, F506, F640, F653, FGC285, FGC83, L268, L536, L721, L741, L768, L781, L82, M1103, M1109, M1160, M1184, M1185, M1186, M1188, M1189, M1190, M1191, M1192, M1193, M1195, M1196, M1198, M1199, M1202, M1204, M1210, M1211, M1212, M1214, M1215, M1216, M1218, M1219, M1222, M1224, M1225, M1226, M1227, M1228, M1229, M1231, M1232, M1235, M1239, M1240, M1241, M1248, M1250, M1252, M1255, M1256, M1258, M1260, M1263, M1264, M1265, M1267, M1269, M1272, M1273, M1274, M45, M5579, N12, P207, P228, P235, P237, P239, P240, P243, P244, P281, P282, P283, P284, P295, PF5471, PF5483, PF5511, PF5867, PF5882, PF5982, PF5999, Page83, V1079, V231, V2974, V5158, V7434, Y451
    50961 35990 ybp
  16. R
    CTS3622, DU01100, DU02488, DU02515, DU02592, DU02606, DU02710, DU06578, DU06772, DU06773, DU06795, DU06874, DU06953, DU06999, DU07156, FGC204, FGC209, FGC214, M207, M603, M607, M613, M614, M620, M628, M642, M667, M702, M703, M705, M734, M764, M789, M792, M805, P224, P229, P232, P280, P285, SK2006
    33223 29587 ybp
  17. R-M173
    DU00260, DU02503, DU02514, DU02541, DU02599, DU06129, DU06981, DU06985, DU07213, M621, M706, M711, M781, M785, MF16853, P233, P234, P236, P238, P242, P245, P286, PAGES29, PF5997, S1, V5063, YSC182
    27073 24423 ybp
  18. R-M343
    A702, DU02498, DU02624, DU06151, DU06785, DU06820, DU06871, DU06988, DU06996, DU07285, F1811, FGC36, L1345, L278, L506, L754, L761, L774, L822, M12190, M343, MF795714, P25, PF6249, PF6259, PF6263, PF6270, PF6271, PF6272, V1532, V1980, V4199, YSC1279
    21961 19016 ybp
  19. R-L389
    L388, L389
    18550 18257 ybp
  20. R-P297
    CTS10834, CTS11468, CTS11985, CTS12478, CTS2466, CTS2664, CTS3575, CTS6832, CTS7400, CTS7659, CTS8591, CTS8627, CTS8665, DU00365, DU02494, DU02527, DU02558, DU02594, DU02607, DU02633, DU02643, DU02680, DU02723, DU05450, DU05457, DU05479, DU06122, DU06771, DU06777, DU06787, DU06819, DU06827, DU06837, DU06843, DU06856, DU06863, DU06884, DU06900, DU06923, DU06930, DU06939, DU06959, DU07160, DU07168, DU07173, DU07192, DU07196, DU07231, DU07267, DU07300, F1794, FGC37, FGC76, L1063, L1348, L1350, L150, L265, L407, L479, L482, L500, L502, L585, L749, L752, L753, L762, M12189, M269, M8208, PF6265, PF6406, PF6409, PF6425, PF6426, PF6428, PF6429, PF6430, PF6434, PF6435, PF6438, PF6443, PF6444, PF6448, PF6463, PF6466, PF6485, PF6494, PF6495, PF6497, PF6498, PF6500, PF6504, PF6506, PF6507, PF6508, PF6509, PF6518, PF6524, PF6525, S10, S17, V1699, V1741, V3721, V3993, YSC167, YSC213, YSC294
    16348 6499 ybp
  21. R-L23
    DU06792, L23, L478
    6293 5911 ybp
  22. R-L51
    DU06954, DU07020, E207, L51
    5863 5484 ybp
  23. R-P310
    DU02472, DU02679, DU06010, FGC44, L11, L151, L52, P310, P311, PF6540, PF6543
    5798 4837 ybp
  24. R-P312
    DU06132, MF42709, P312
    5028 4759 ybp
  25. R-U152
    S28
    4727 4549 ybp
  26. R-L2
    L2
    4571 4394 ybp
  27. R-Z49
    S485, Z29987, Z49
    4427 4155 ybp
  28. R-A21822
    DU00307
    4130 4130 ybp
  29. R-S8183
    DU16187, S8183
    3726 3534 ybp
  30. R-Y4356
    DU16041, Y4356
    3087 3087 ybp
  31. R-Y4353
    DU10115, DU10976, DU11828, FGC20796
    2912 2724 ybp
  32. R-Y4354
    A1168, FGC20774, FGC31475, S12993
    2951 2481 ybp
  33. R-S8172
    S8172
    2393 2206 ybp
  34. R-CTS3409
    CTS3409, Y141784
    2139 1950 ybp
  35. R-BY184991
    BY184991, BY185077, CTS10678, CTS1213, CTS2513, CTS4371, CTS5163, CTS7200, CTS7224, CTS9943, DU05986, FGC65250, FT295082, FT295300, FT296638, FT297764, FT298603, FT298609, FT298685, FT298688, FT298715, FT298892, FT299349, FT315459, FT315794, FT318577, FT320198, FT320642, FT325210, FT35828, FT37659, FT440070, FTA9291, FTA9292, FTA9293
  36. R-C141297
    C141297, C219302, CTS8256, DU01864, DU02142, DU03165, DU04021, DU04027, DU06233, FT299571, MF783836, TY174909, Y525149, Y549909
mtDNA pathway C1b2
From de-novo tree placement
  1. L1'2'3'4'5'6'7
    chrM:16181G>A
  2. L2'3'4'5'6'7
    chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
  3. L2'3'4'6
    chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
  4. L3'4
    chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
  5. L3
    chrM:193A>G, chrM:442A>G
  6. M
    chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
  7. CZ
    chrM:14910A>T, chrM:15721T>C, chrM:4138A>G, chrM:6619C>A, chrM:8007G>A
  8. C1
    chrM:11337G>A, chrM:12686A>G, chrM:13741T>C, chrM:15748T>C, chrM:2975T>A, chrM:8968A>G
  9. C1b2
    chrM:16255G>A, chrM:3665C>T, chrM:6436G>A, chrM:8980C>T
Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files
Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 765826632 · Read length: — · Date: 2020-04-21
File Format Size Reference Aligner md5
HG00738.final.cram CRAM 15.5 GB 86adb77a9613f0a1456eb875ac373386 Download
Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.