SAMEA6603631

EXTERNAL

Sample

Accession: SAMEA6603631
Alias: HG00702
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:12857A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
D
chrM:15785T>C, chrM:4306C>T, chrM:4601C>A
D5
chrM:4724A>G, chrM:531T>C, chrM:9820A>G
D5a'b
chrM:16142C>T, chrM:8603A>G
D5b
chrM:105T>C, chrM:15147A>G, chrM:16449C>T, chrM:4576A>G, chrM:472C>T
D5b3
chrM:3515G>A
chrM:12857A>G
chrM:12857A>G, chrM:15734T>C, chrM:16138T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 722241830 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG00702.final.cram	CRAM	13.5 GB	—	—	3da5c543c06daebe4bebe8e7ea9e728b	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.