SAMEA6603630

EXTERNAL

Sample

Accession: SAMEA6603630
Alias: HG00700
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:5096T>C

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
D
chrM:15785T>C, chrM:4306C>T, chrM:4601C>A
D4
chrM:14091C>T, chrM:2434G>A, chrM:7837C>T
D4a
chrM:14402T>C, chrM:2629C>T, chrM:7896T>C
chrM:15942C>T [Node409]
chrM:15942C>T
D4a7
chrM:13073T>C, chrM:13389A>G, chrM:15312T>C, chrM:7833C>T, chrM:9268T>C
chrM:5096T>C
chrM:15306G>A, chrM:5096T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 751436214 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG00700.final.cram	CRAM	13.8 GB	—	—	3a4a67dc2567c1d2ad381dce7a0d633f	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.