SAMEA6603614

EXTERNAL

Sample

Accession: SAMEA6603614
Alias: HG00615
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:3639T>C [Node706]

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
CZ
chrM:14910A>T, chrM:15721T>C, chrM:4138A>G, chrM:6619C>A, chrM:8007G>A
Z-T152C!
chrM:15207T>C, chrM:15608C>T, chrM:15683C>T, chrM:6175A>G, chrM:8513T>C
Z3
chrM:9631T>C
chrM:3639T>C [Node706]
chrM:10055T>C, chrM:11708T>C, chrM:12528A>G, chrM:15347A>G, chrM:15646T>C, chrM:3639T>C, chrM:4883G>A

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 749478392 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG00615.final.cram	CRAM	14.0 GB	—	—	d9ebe3f4d45b9efce73ce382cf3af4fd	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.