SAMEA6603602

EXTERNAL

Sample

Accession: SAMEA6603602
Alias: HG00561
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:4390T>C

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R9
chrM:13351G>C, chrM:3393C>T
F
chrM:5815T>C, chrM:9733G>A
F1
chrM:10032T>C, chrM:11829G>A, chrM:6385G>A
F1a'c'f
chrM:13182G>A, chrM:15552G>A, chrM:8476G>A
chrM:15595T>C [Node2581]
chrM:15595T>C
F1a
chrM:3509C>T
F1a1'4
chrM:8971G>A
F1a1
chrM:15585A>G
chrM:4390T>C
chrM:12053G>A, chrM:15758A>G, chrM:16243G>A, chrM:4390T>C, chrM:9886T>C

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 776652422 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG00561.final.cram	CRAM	14.6 GB	—	—	0be5b5759935b143002a178c60b1d76c	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.