SAMEA6603600

EXTERNAL

Sample

Accession: SAMEA6603600
Alias: HG00555
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:10443A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1b
chrM:1162T>C, chrM:133G>A, chrM:134T>C, chrM:14192A>G, chrM:14538T>C, chrM:15549T>C, chrM:15687C>T, chrM:15693C>T, chrM:16177G>T, chrM:16187C>T, chrM:16350A>G, chrM:1776T>C, chrM:2192A>G, chrM:2731T>C, chrM:3116G>A, chrM:5971C>T, chrM:6250T>C, chrM:6412A>G, chrM:7290C>T, chrM:7671A>G, chrM:862G>A
L1b1a-A189G
chrM:13303C>A, chrM:13626A>G, chrM:16187T>C, chrM:4459A>G, chrM:4469G>A, chrM:4816T>C, chrM:5078T>C
L1b1a3
chrM:13403G>A
chrM:10443A>G
chrM:10443A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 714014864 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG00555.final.cram	CRAM	16.2 GB	—	—	9938c0bab2adc6a77e52a968885d4e55	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.