SAMEA6603598

EXTERNAL

Sample

Accession: SAMEA6603598
Alias: HG00544
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:9811A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
B5
chrM:15563T>C, chrM:8007G>A, chrM:9373T>C
B5a
chrM:14658A>G, chrM:15689C>A, chrM:16202A>G, chrM:2960A>G
B5a2
chrM:10574C>T, chrM:9385G>A
chrM:9811A>G
chrM:15094A>G, chrM:15563T>C, chrM:15689A>G, chrM:15701C>T, chrM:16192A>G, chrM:16254C>T, chrM:9811A>G

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 735242344 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG00544.final.cram	CRAM	13.8 GB	—	—	ca48642251cb317d751c229761fa6b94	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.