SAMEA6603590

EXTERNAL

Sample

Accession: SAMEA6603590
Alias: HG00501
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:14938A>G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
M7b'c
chrM:3494C>T, chrM:5878C>T, chrM:9247T>C
M7b1a1
chrM:11828C>T, chrM:15552G>A, chrM:15720T>C, chrM:16142C>T, chrM:3471G>A, chrM:3587A>G, chrM:4774A>G, chrM:4883G>A, chrM:6103T>C, chrM:7107T>C, chrM:7276G>A
M7b1a1a3
chrM:14401A>G
chrM:16449C>T
chrM:16449C>T
chrM:14938A>G
chrM:14938A>G, chrM:15697G>A, chrM:16199G>A

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 691020220 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG00501.final.cram	CRAM	12.7 GB	—	—	4b89b39037504802a5f7fc260b9e6105	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.