SAMEA6603580

EXTERNAL

Sample

Accession: SAMEA6603580
Alias: HG00438
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:3200T>C

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R9
chrM:13351G>C, chrM:3393C>T
F
chrM:5815T>C, chrM:9733G>A
F1
chrM:10032T>C, chrM:11829G>A, chrM:6385G>A
F1-T16189C!
F1e
chrM:14447G>A, chrM:5010T>C
F1e1
chrM:12041G>A
chrM:3200T>C
chrM:10386A>G, chrM:15714C>T, chrM:15727T>C, chrM:3200T>C, chrM:5008G>A, chrM:6780T>C, chrM:7188A>G, chrM:9646C>T

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 749964702 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG00438.final.cram	CRAM	14.1 GB	—	—	377ab4d14204b345e57a4a7baa36b4b7	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.