SAMEA6603574

EXTERNAL

Sample

Accession: SAMEA6603574
Alias: HG00408
Center: NYGC
Description: 30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway chrM:133G>A [Node2687]

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R9
chrM:13351G>C, chrM:3393C>T
R9c
chrM:10425A>G, chrM:14902T>C, chrM:15758A>G, chrM:15942C>T, chrM:7284T>C
R9c1
chrM:15580T>C
R9c1b1
chrM:12041G>A, chrM:15758A>G, chrM:16143C>T, chrM:16472A>G, chrM:7107T>C
chrM:133G>A [Node2687]
chrM:133G>A, chrM:4483C>T

Origin

No geographic coordinate recorded.

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina NovaSeq 6000 · Layout: PAIRED · Reads: 755902162 · Read length: — · Date: 2020-04-21

File	Format	Size	Reference	Aligner	md5
HG00408.final.cram	CRAM	14.0 GB	—	—	abb848a98ece4f07f1b4a5977e9728be	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.