SAMEA6104838

EXTERNAL

Sample

Accession

SAMEA6104838

Alias

I10873

Sex

Male

Center

HARVARD MEDICAL SCHOOL

Description

Shum_Laka

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L1c2a1b

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1c
chrM:10009G>A, chrM:12908A>G, chrM:13423T>A, chrM:14334C>T, chrM:15552G>A, chrM:15717C>T, chrM:15783C>T, chrM:16143C>T, chrM:16178C>A, chrM:16181G>C, chrM:16309G>A, chrM:5374A>G, chrM:5494T>C, chrM:7450G>A, chrM:8495A>G
L1c1'2'4'6
chrM:16190C>T, chrM:16289A>G, chrM:9744T>C
L1c2'4
chrM:11472C>T, chrM:15716A>G
L1c2
chrM:10215A>G, chrM:10216C>T, chrM:11077A>G, chrM:12572A>G, chrM:15688A>C, chrM:15709C>G, chrM:15950C>T, chrM:5573G>A, chrM:5676T>C, chrM:6499A>G, chrM:6760G>A, chrM:8207A>G, chrM:8300T>C
L1c2a
chrM:14439C>T, chrM:15207T>C, chrM:844T>C
L1c2a1
chrM:15636G>A
chrM:15568G>A
chrM:15568G>A
L1c2a1b
chrM:11505A>G, chrM:15509T>C, chrM:3200T>C, chrM:4165T>C, chrM:4243G>A, chrM:4660G>A, chrM:5078T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 15160346 · Read length: — · Date: 2020-01-22

File	Format	Size	Reference	Aligner	md5
I10873.1240k.bam	BAM	910.0 MB	—	—	f1cff0f52433bbc3aabacc3b708874f2	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 110810 · Read length: — · Date: 2020-01-22

File	Format	Size	Reference	Aligner	md5
I10873.mt.bam	BAM	4.6 MB	—	—	4201360fe2cb0772e8ddb1199b494e78	Download

Instrument: HiSeq X Ten · Layout: SINGLE · Reads: 723422167 · Read length: — · Date: 2020-01-22

File	Format	Size	Reference	Aligner	md5
I10873.WGS.bam	BAM	26.8 GB	—	—	506fb2e9c78b153047ff780339b37a1e	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.