SAMEA5953027
EXTERNALSample
- Accession
SAMEA5953027- Alias
- OTTM_84
- Sex
- Female
- Center
- Max Planck Institute for the Science of Human History
- Description
- OTTM_84
- Source publications
Y-DNA pathway
No haplogroup call for this sample.
mtDNA pathway
U5b3
-
L1'2'3'4'5'6'7chrM:16181G>A
-
L2'3'4'5'6'7chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
-
L2'3'4'6chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
-
L3'4chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
-
L3chrM:193A>G, chrM:442A>G
-
NchrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
-
RchrM:15646T>C
-
UchrM:10890A>G, chrM:11731A>G, chrM:11795G>A
-
U5chrM:13040T>C, chrM:15693C>T
-
U5a'bchrM:2620T>C, chrM:8900G>A
-
U5bchrM:13605T>C, chrM:16142C>T, chrM:7191A>G
-
U5b3chrM:6649G>A
Origin
Sequencing & coverage
No sequencing data available.
Sequence data & files
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 3740 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| OOH003.A0101_S0_L001_R1_001.fastq.truncated.mapped.mappedonly.sorted.qF.sorted.cleaned_rmdup.sorted.PMDnonUDG.trim.bam | BAM | 181.0 KB | — | — | d5e31315eee708bf40f6e4f75450a6c5 | Download |
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 36214 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| OOH003.A0102.PMD.trim.bam | BAM | 1.7 MB | — | — | 9977a793a6a9cfc2d12d6a33ca0e0261 | Download |
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 18588 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| OOH003.A0101.PMDnonUDG.trim.bam | BAM | 877.1 KB | — | — | eb3f34f354329007d32d183a832b8e28 | Download |
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 3232 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| OOH003.A0102_S0_L002_R1_001.fastq.truncated.mapped.mappedonly.sorted.qF.sorted.cleaned_rmdup.sorted.PMD.trim.bam | BAM | 151.7 KB | — | — | 9f5c2bbe15a9fc7585f241a7ebc9d9d8 | Download |
Ancestry
No ancestry breakdown available.
Predicted phenotype and genetic-distance metrics are not yet available.