SAMEA5953019
EXTERNALSample
- Accession
SAMEA5953019- Alias
- OTTM_151ind1
- Sex
- Female
- Center
- Max Planck Institute for the Science of Human History
- Description
- OTTM_151ind1
- Source publications
Y-DNA pathway
No haplogroup call for this sample.
mtDNA pathway
H13a1a1
-
L1'2'3'4'5'6'7chrM:16181G>A
-
L2'3'4'5'6'7chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
-
L2'3'4'6chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
-
L3'4chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
-
L3chrM:193A>G, chrM:442A>G
-
NchrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
-
RchrM:15646T>C
-
HVchrM:11142A>G, chrM:14189T>C
-
HchrM:2130G>A, chrM:6451T>C
-
H13achrM:14295C>T, chrM:1683C>T
-
H13a1chrM:4168A>G
-
H13a1achrM:13103C>T, chrM:15942C>T
-
H13a1a1chrM:12749T>C, chrM:6760G>A
Origin
Sequencing & coverage
No sequencing data available.
Sequence data & files
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 82424 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| OOH019.A0101.PMDnonUDG.trim.bam | BAM | 4.1 MB | — | — | 4f634919aa8f48e9e17574a254471a80 | Download |
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 6727 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| OOH019.A0101_S0_L002_R1_001.fastq.truncated.mapped.mappedonly.sorted.qF.sorted.cleaned_rmdup.sorted.PMDnonUDG.trim.bam | BAM | 367.8 KB | — | — | 84e2c63da795459caaed8353ad9e736c | Download |
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 62421 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| OOH019.A0102.PMD.trim.bam | BAM | 3.3 MB | — | — | 9e4fdf6854d3d3f6545b01e198e065c6 | Download |
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 983 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| OOH019.A0102_S0_L002_R1_001.fastq.truncated.mapped.mappedonly.sorted.qF.sorted.cleaned_rmdup.sorted.PMD.trim.bam | BAM | 53.4 KB | — | — | 98f20eaf12252f92f629c7b497972009 | Download |
Ancestry
No ancestry breakdown available.
Predicted phenotype and genetic-distance metrics are not yet available.