SAMEA5952986
EXTERNALSample
- Accession
SAMEA5952986- Alias
- AMP_1
- Sex
- Male
- Center
- Max Planck Institute for the Science of Human History
- Description
- AMP_1
- Source publications
Y-DNA pathway
No haplogroup call for this sample.
mtDNA pathway
T2b33
-
L1'2'3'4'5'6'7chrM:16181G>A
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L2'3'4'5'6'7chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
-
L2'3'4'6chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
-
L3'4chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
-
L3chrM:193A>G, chrM:442A>G
-
NchrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
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RchrM:15646T>C
-
JTchrM:10674A>G, chrM:14875C>A, chrM:15549T>C, chrM:3639T>C
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TchrM:12791G>A, chrM:1312G>A, chrM:133G>A, chrM:14328G>A, chrM:15030A>G, chrM:15351G>A, chrM:15717C>T, chrM:4340A>G, chrM:8120G>A, chrM:9886T>C
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T2chrM:11235A>G, chrM:13656A>G
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T2bchrM:15727T>C, chrM:354G>A, chrM:4570G>A
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T2b33chrM:15689C>T, chrM:16190C>T, chrM:16378A>G, chrM:3984T>C, chrM:954A>G
Origin
Sequencing & coverage
No sequencing data available.
Sequence data & files
Instrument: NextSeq 500 ·
Layout: SINGLE ·
Reads: 36651 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| Sample_ABI934_1AMP.PMD.trim.bam | BAM | 2.0 MB | — | — | 0f900b2eb6813055e9554efeadd92c27 | Download |
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 6271 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| AMP001.A0101_S0_L002_R1_001.fastq.truncated.mapped.mappedonly.sorted.qF.sorted.cleaned_rmdup.sorted.PMD.trim.bam | BAM | 320.1 KB | — | — | 4bff5add211c145ae4326998318ef3c9 | Download |
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 135897 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| AMP001.A0101.PMD.trim.bam | BAM | 6.9 MB | — | — | 61d6704933a66aa2ef263c0b8b4303f8 | Download |
Instrument: Illumina HiSeq 4000 ·
Layout: SINGLE ·
Reads: 155752 ·
Read length: — ·
Date: 2019-10-10
| File | Format | Size | Reference | Aligner | md5 | |
|---|---|---|---|---|---|---|
| ABI934_1AMP_HS.PMD.trim.bam | BAM | 8.1 MB | — | — | aa93c4e1663c9909335b69ba25dcca25 | Download |
Ancestry
No ancestry breakdown available.
Predicted phenotype and genetic-distance metrics are not yet available.