SAMEA5770306

EXTERNAL

Sample

Accession

SAMEA5770306

Alias

R1290

Sex

Female

Center

STANFORD SCHOOL OF MEDICINE

Description

DNA extracted from the petrous bone of an individual (sample R1290) buried in Cancelleria, Italy and dated to 1295-1400calCE (Medieval/EarlyModern). The sample was whole genome sequenced to 1.08x. 34.62% of DNA extracted from the sample was human (mapped to hg19).

Source publications

Ancient Rome: A genetic crossroads of Europe and the Mediterranean (2019)

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway H1c3a

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
HV
chrM:11142A>G, chrM:14189T>C
H
chrM:2130G>A, chrM:6451T>C
H1
chrM:2434G>A
H1c
chrM:16470T>C
H1c3
chrM:16249A>G, chrM:7896T>C
H1c3a
chrM:15599C>T, chrM:15642A>G, chrM:16138T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: unspecified · Layout: SINGLE · Reads: 64293343 · Read length: — · Date: 2019-11-05

File	Format	Size	Reference	Aligner	md5
R1290.bam	BAM	2.9 GB	—	—	9a925cc4a97300217252469e190f6fb7	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.