SAMEA5770299

EXTERNAL

Sample

Accession

SAMEA5770299

Alias

R63

Sex

Male

Center

STANFORD SCHOOL OF MEDICINE

Description

DNA extracted from the petrous bone of an individual (sample R63) buried in Villa Magna, Italy and dated to 970-1010calCE (Medieval/EarlyModern). The sample was whole genome sequenced to 1.97x. 71.5% of DNA extracted from the sample was human (mapped to hg19).

Source publications

Ancient Rome: A genetic crossroads of Europe and the Mediterranean (2019)

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway K1a2a

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U2'3'4'7'8'9
chrM:1235A>G
U8
chrM:9121T>C
U8b
chrM:13590C>T, chrM:2903A>G, chrM:8478G>A
K
chrM:10722T>C, chrM:14221T>C, chrM:15647T>C, chrM:15734T>C, chrM:9973A>G
K1
chrM:613T>C, chrM:9821A>G
K1a
chrM:16490C>T
K1a2a
chrM:10448T>C, chrM:5196G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: unspecified · Layout: SINGLE · Reads: 102233059 · Read length: — · Date: 2019-11-05

File	Format	Size	Reference	Aligner	md5
R63.bam	BAM	6.5 GB	—	—	a752f457b647ef771c33cab466ed3dff	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.