SAMEA5770298

EXTERNAL

Sample

Accession

SAMEA5770298

Alias

R59

Sex

Male

Center

STANFORD SCHOOL OF MEDICINE

Description

DNA extracted from the petrous bone of an individual (sample R59) buried in Villa Magna, Italy and dated to 820-990calCE (Medieval/EarlyModern). The sample was whole genome sequenced to 1.44x. 64.3% of DNA extracted from the sample was human (mapped to hg19).

Source publications

Ancient Rome: A genetic crossroads of Europe and the Mediterranean (2019)

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway N1b1a

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
N1b1a
chrM:1022G>A, chrM:10785A>G, chrM:1127C>T, chrM:1143G>A, chrM:15568G>A, chrM:15599C>G, chrM:15813G>A, chrM:2063C>T, chrM:3344C>A, chrM:4383C>T, chrM:4894G>A, chrM:7674G>A, chrM:7895C>T, chrM:8259A>G, chrM:8758C>T, chrM:9661T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: unspecified · Layout: SINGLE · Reads: 75816652 · Read length: — · Date: 2019-11-05

File	Format	Size	Reference	Aligner	md5
R59.bam	BAM	4.9 GB	—	—	95c42f8705f1d0e8bf4215f5cd454dfc	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.