SAMEA5770224

EXTERNAL

Sample

Accession

SAMEA5770224

Alias

R42

Sex

Female

Center

STANFORD SCHOOL OF MEDICINE

Description

DNA extracted from the petrous bone of an individual (sample R42) buried in Isola Sacra, Italy and dated to 22-120calCE (Imperial). The sample was whole genome sequenced to 2.35x. 68.4% of DNA extracted from the sample was human (mapped to hg19).

Source publications

Ancient Rome: A genetic crossroads of Europe and the Mediterranean (2019)

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway U1a1

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U1a
chrM:12527A>G, chrM:13493A>G, chrM:13787G>A, chrM:14571G>A, chrM:15377A>C, chrM:15672T>C, chrM:1642C>T
U1a1
chrM:4414G>A, chrM:5449G>A, chrM:7004T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: unspecified · Layout: SINGLE · Reads: 232305435 · Read length: — · Date: 2019-11-05

File	Format	Size	Reference	Aligner	md5
R42.bam	BAM	9.9 GB	—	—	f15b0ebf30958166fd1514beb33113ee	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.