SAMEA5770211

EXTERNAL

Sample

Accession

SAMEA5770211

Alias

R29

Sex

Male

Center

STANFORD SCHOOL OF MEDICINE

Description

DNA extracted from the petrous bone of an individual (sample R29) buried in Su Crocefissu, Italy and dated to 3500-900BCE(Bronze/Copper Age). The sample was whole genome sequenced to 0.54x. 27.9% of DNA extracted from the sample was human (mapped to hg19).

Source publications

Ancient Rome: A genetic crossroads of Europe and the Mediterranean (2019)

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway J2b1a

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R2'JT
JT
chrM:10674A>G, chrM:14875C>A, chrM:15549T>C, chrM:3639T>C
J
chrM:12035A>G, chrM:13131G>A, chrM:15492C>T, chrM:15942C>T, chrM:16287C>T, chrM:16482T>C, chrM:9821A>G
J2
chrM:14680G>A, chrM:16142C>T, chrM:6899C>T
J2b1a
chrM:15235G>A, chrM:15701C>T, chrM:5056C>T, chrM:9595G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: unspecified · Layout: SINGLE · Reads: 37947700 · Read length: — · Date: 2019-11-05

File	Format	Size	Reference	Aligner	md5
R29.bam	BAM	2.0 GB	—	—	cfc806c0f987650ee63d340d51a3f10d	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.