SAMEA5743557

EXTERNAL

Sample

Accession

SAMEA5743557

Alias

I3344

Sex

Female

Center

HARVARD MEDICAL SCHO

Description

Roopkund_A

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway U2c1

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U2'3'4'7'8'9
chrM:1235A>G
U2
chrM:15474A>G
U2c
chrM:14358T>C, chrM:14484A>G, chrM:15657C>T, chrM:5213C>A
U2c1
chrM:7446T>C, chrM:8099C>T, chrM:9190C>T

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 88241 · Read length: — · Date: 2019-08-20

File	Format	Size	Reference	Aligner	md5
I3344.MT.bam	BAM	2.8 MB	—	—	27334562ed8e31f05a00f339ff5613cf	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 257523 · Read length: — · Date: 2019-08-20

File	Format	Size	Reference	Aligner	md5
I3344.1240K.bam	BAM	13.9 MB	—	—	9098650e85bd6ed1e690bd8a88385b12	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.