SAMEA5423865

EXTERNAL

Sample

Accession

SAMEA5423865

Alias

I8901

Sex

Male

Center

HARVARD MEDICAL SCHOOL

Description

Kenya_Pastoral_IA

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L3h1a1

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
L3h1
chrM:11013A>G, chrM:1143G>A, chrM:15734T>C, chrM:15942C>T, chrM:3811A>G, chrM:4723C>T, chrM:7284T>C, chrM:8932T>C, chrM:8998G>A
L3h1a
chrM:4915T>C
L3h1a1
chrM:13131G>A, chrM:13349T>C, chrM:13533T>C, chrM:15646T>C, chrM:15721T>C, chrM:7470T>C, chrM:7908G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 309706 · Read length: — · Date: 2019-05-30

File	Format	Size	Reference	Aligner	md5
I8901.1240k.bam	BAM	15.4 MB	—	—	29dd099573062e520828945fb3a387b3	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 4195 · Read length: — · Date: 2019-05-30

File	Format	Size	Reference	Aligner	md5
I8901.mt.bam	BAM	151.5 KB	—	—	dd4145290088309f89814487d2026240	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.