SAMEA5423856

EXTERNAL

Sample

Accession

SAMEA5423856

Alias

I12379

Sex

Male

Center

HARVARD MEDICAL SCHOOL

Description

Kenya_Pastoral_IA

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L3h1a2a1

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
L3h1
chrM:11013A>G, chrM:1143G>A, chrM:15734T>C, chrM:15942C>T, chrM:3811A>G, chrM:4723C>T, chrM:7284T>C, chrM:8932T>C, chrM:8998G>A
L3h1a
chrM:4915T>C
L3h1a2a1
chrM:11598T>C, chrM:14010A>G, chrM:14285C>T, chrM:15069C>T, chrM:15822A>G, chrM:16138T>C, chrM:4111T>C, chrM:4165T>C, chrM:8204C>A, chrM:8366C>T

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 14074969 · Read length: — · Date: 2019-05-30

File	Format	Size	Reference	Aligner	md5
I12379.1240k.bam	BAM	869.2 MB	—	—	41cdb9446d17b5726a05c6efa2c2398f	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 128107 · Read length: — · Date: 2019-05-30

File	Format	Size	Reference	Aligner	md5
I12379.mt.bam	BAM	6.2 MB	—	—	0ca53340c5561e0dac5c3312baf44110	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.