SAMEA5423842

EXTERNAL

Sample

Accession

SAMEA5423842

Alias

I8808

Sex

Male

Center

HARVARD MEDICAL SCHOOL

Description

Kenya_LSA

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway L4b2a2c

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L4b
chrM:15734T>C, chrM:15785T>C
L4b2
chrM:12893A>G, chrM:15716A>T, chrM:15778C>T, chrM:15822A>G, chrM:16138T>C, chrM:16236A>G, chrM:3341G>A, chrM:5683G>A, chrM:7527T>C, chrM:9278A>G
L4b2a2
chrM:10206A>C, chrM:1118T>C, chrM:4372A>G, chrM:837T>C
chrM:15595T>C [Node1852]
chrM:15595T>C
L4b2a2c
chrM:14877T>C, chrM:16384T>C, chrM:7901C>T

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 18689 · Read length: — · Date: 2019-05-30

File	Format	Size	Reference	Aligner	md5
I8808.mt.bam	BAM	554.9 KB	—	—	561bfa476ef80254f9c68689131c99b2	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 9997120 · Read length: — · Date: 2019-05-30

File	Format	Size	Reference	Aligner	md5
I8808.1240k.bam	BAM	446.3 MB	—	—	fb8d436d9b68cff65a93b2939dcf01dd	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.