SAMEA5229370

EXTERNAL

Sample

Accession

SAMEA5229370

Alias

I3243

Sex

Male

Center

HARVARD MEDICAL SCHOOL, DEPARTMENT OF GENETICS

Description

NW_Iberia_CA_Stp

Source publications

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway U5a1a2b

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
U
chrM:10890A>G, chrM:11731A>G, chrM:11795G>A
U5
chrM:13040T>C, chrM:15693C>T
U5a'b
chrM:2620T>C, chrM:8900G>A
U5a
chrM:14216A>G, chrM:15679C>T
U5a1
chrM:14641A>G, chrM:15822A>G
U5a1-T16192C!
U5a1a
chrM:1124T>C
U5a1a2b
chrM:11769C>T, chrM:12528A>G

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 165005 · Read length: — · Date: 2019-03-13

File	Format	Size	Reference	Aligner	md5
I3243_1240k.bam	BAM	9.2 MB	—	—	52425eb76435d62648ec3228a4fdb610	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 976 · Read length: — · Date: 2019-03-13

File	Format	Size	Reference	Aligner	md5
S3243.E1.L4_MT.bam	BAM	39.4 KB	—	—	5cd6e414e146597ce44ccca7239d65da	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 794 · Read length: — · Date: 2019-03-13

File	Format	Size	Reference	Aligner	md5
S3243.E1.L5_MT.bam	BAM	33.4 KB	—	—	22fd23f9be893efe12935d98938d66e7	Download

Instrument: NextSeq 500 · Layout: SINGLE · Reads: 861 · Read length: — · Date: 2019-03-13

File	Format	Size	Reference	Aligner	md5
S3243.E1.L2_MT.bam	BAM	35.8 KB	—	—	3a9070d7d4e54718d924891063febf6d	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.