SAMEA3356126

EXTERNAL

Sample

Accession

SAMEA3356126

Alias

Oase1

Sex

Male

Center

MPI-EVA

Description

Nuclear and mitochondrial genome sequence from the Oase1 sample found in Peştera cu Oase, Romania. A full description of the sample is found in: Trinkaus, E. et al PNAS 2003 100 (20) 11231-11236 doi:10.1073/pnas.2035108100

Source publications

An early modern human from Romania with a recent Neanderthal ancestor (2015)

Y-DNA pathway

No haplogroup call for this sample.

mtDNA pathway N

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina HiSeq 2500 · Layout: PAIRED · Reads: 25475 · Read length: — · Date: 2015-06-22

File	Format	Size	Reference	Aligner	md5
Oase1_strict_filter_mtDNA.bam	BAM	1.1 MB	—	—	392679936779f0a5b81bbefd27bd8875	Download

Instrument: Illumina HiSeq 2500 · Layout: SINGLE · Reads: 1527240 · Read length: — · Date: 2015-06-22

File	Format	Size	Reference	Aligner	md5
Oase1_strict_filter_nuclear.bam	BAM	198.7 MB	—	—	4614ca38cb5f2f539deb854599252505	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.