SAMEA3302902

EXTERNAL

Sample

Accession

SAMEA3302902

Alias

HGDP01015

Sex

Male

Center

Description

simons_data_sample_115

Source publications

Y-DNA pathway Q1a2a1a1

Called haplogroup is not yet placed in the tree.

mtDNA pathway D1e

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
M
chrM:14206T>C, chrM:14466G>A, chrM:16482T>C, chrM:9823C>T
D
chrM:15785T>C, chrM:4306C>T, chrM:4601C>A
D4
chrM:14091C>T, chrM:2434G>A, chrM:7837C>T
D1
chrM:1516C>T, chrM:15748T>C
D1e
chrM:10671A>G, chrM:15684C>T, chrM:16138T>C, chrM:2739G>A, chrM:3086A>G

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina HiSeq 2000 · Layout: PAIRED · Reads: 593743284 · Read length: — · Date: 2016-05-03

File	Format	Size	Reference	Aligner	md5
ERR1395599_1.fastq.gz	FASTQ	47.2 GB	—	—	82c8f2dd68dcda07666fe7a757589471	Download
ERR1395599_2.fastq.gz	FASTQ	48.3 GB	—	—	8c324fe78774a4bf2e84473abf3276cf	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.