SAMEA3302876

EXTERNAL

Sample

Accession

SAMEA3302876

Alias

HGDP01076

Sex

Male

Center

Description

simons_data_sample_113

Source publications

Y-DNA pathway J1b2b

Called haplogroup is not yet placed in the tree.

mtDNA pathway J2b1a

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L3'4
chrM:13073T>C, chrM:15701T>C, chrM:16174T>C, chrM:3017T>C, chrM:3527G>A, chrM:6679T>C, chrM:6944A>G
L3
chrM:193A>G, chrM:442A>G
N
chrM:10296C>T, chrM:14724A>G, chrM:8124G>A, chrM:8963C>T
R
chrM:15646T>C
R2'JT
JT
chrM:10674A>G, chrM:14875C>A, chrM:15549T>C, chrM:3639T>C
J
chrM:12035A>G, chrM:13131G>A, chrM:15492C>T, chrM:15942C>T, chrM:16287C>T, chrM:16482T>C, chrM:9821A>G
J2
chrM:14680G>A, chrM:16142C>T, chrM:6899C>T
J2b1a
chrM:15235G>A, chrM:15701C>T, chrM:5056C>T, chrM:9595G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina HiSeq 2000 · Layout: PAIRED · Reads: 625897928 · Read length: — · Date: 2016-05-03

File	Format	Size	Reference	Aligner	md5
ERR1395597_1.fastq.gz	FASTQ	50.4 GB	—	—	b0a56df3f4925228ccd9e81264583d7d	Download
ERR1395597_2.fastq.gz	FASTQ	51.1 GB	—	—	983bfbb4b1998e6291fdf52fec7abb9c	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.