SAMEA3302769

EXTERNAL

Sample

Accession

SAMEA3302769

Alias

HGDP00474

Sex

Male

Center

Description

simons_data_sample_164

Source publications

Y-DNA pathway E1b1a1a1g1

Called haplogroup is not yet placed in the tree.

mtDNA pathway L2a2a1

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L2'3'4'5'6'7
chrM:12528G>A, chrM:15734C>T, chrM:16187C>T, chrM:2182A>G, chrM:2309C>T, chrM:6569G>A, chrM:7891T>C
L2'3'4'6
chrM:10111A>G, chrM:10233C>T, chrM:12929T>C, chrM:14724G>A, chrM:15610T>C, chrM:249A>T, chrM:8078T>C
L2
chrM:12194G>A, chrM:13013G>A, chrM:15813G>A, chrM:16138T>C, chrM:16187T>C, chrM:1840T>C, chrM:7629G>A, chrM:8644A>G, chrM:9538T>C
L2a'b'c'd
chrM:11367T>C
L2a
chrM:6598T>C
L2a1'2'3'4
chrM:11337G>A, chrM:13226A>G, chrM:13989A>G, chrM:15717C>T, chrM:6697C>T, chrM:7194A>G
L2a2'3'4
chrM:15652T>C, chrM:15734T>C, chrM:16138T>C, chrM:6175A>G
L2a2
chrM:133G>A, chrM:15714C>T, chrM:9355G>A
L2a2a1
chrM:15226G>A, chrM:8150C>T, chrM:8506T>C, chrM:8861G>A

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina HiSeq 2000 · Layout: PAIRED · Reads: 640423124 · Read length: — · Date: 2016-05-03

File	Format	Size	Reference	Aligner	md5
ERR1395571_1.fastq.gz	FASTQ	53.6 GB	—	—	34369f60ff87718c700b3b9954ffb543	Download
ERR1395571_2.fastq.gz	FASTQ	53.7 GB	—	—	4326468b2e23239ffce08077f8d9854f	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.