SAMEA3302736

EXTERNAL

Sample

Accession

SAMEA3302736

Alias

HGDP01286

Sex

Male

Center

Description

simons_data_sample_117

Source publications

Y-DNA pathway E1b1b1a1a

Called haplogroup is not yet placed in the tree.

mtDNA pathway L1b1a-A189G

From de-novo tree placement

mt-MRCA
L1'2'3'4'5'6'7
chrM:16181G>A
L1
chrM:13212T>C, chrM:13601T>C, chrM:13983G>A, chrM:15716A>G, chrM:16181A>G, chrM:3089G>A, chrM:6478A>G, chrM:6812T>C
L1b
chrM:1162T>C, chrM:133G>A, chrM:134T>C, chrM:14192A>G, chrM:14538T>C, chrM:15549T>C, chrM:15687C>T, chrM:15693C>T, chrM:16177G>T, chrM:16187C>T, chrM:16350A>G, chrM:1776T>C, chrM:2192A>G, chrM:2731T>C, chrM:3116G>A, chrM:5971C>T, chrM:6250T>C, chrM:6412A>G, chrM:7290C>T, chrM:7671A>G, chrM:862G>A
L1b1a-A189G
chrM:13303C>A, chrM:13626A>G, chrM:16187T>C, chrM:4459A>G, chrM:4469G>A, chrM:4816T>C, chrM:5078T>C

Origin

Sequencing & coverage

No sequencing data available.

Sequence data & files

Instrument: Illumina HiSeq 2000 · Layout: PAIRED · Reads: 621423681 · Read length: — · Date: 2016-05-03

File	Format	Size	Reference	Aligner	md5
ERR1395593_1.fastq.gz	FASTQ	52.4 GB	—	—	4df533cb58baa8c5b7f3158ad3ac0fb2	Download
ERR1395593_2.fastq.gz	FASTQ	52.5 GB	—	—	ecc16ab7e2abdc16ab027ae9c3f4782b	Download

Ancestry

No ancestry breakdown available.

Predicted phenotype and genetic-distance metrics are not yet available.